Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 239 4e-57 seq3 116 3e-20 seq2 107 2e-17 >seq1 Length=3278253 Score = 239 bits (264), Expect = 4e-57 Identities = 475/692 (69%), Gaps = 16/692 (2%) Strand=Plus/Plus Query 551918 TTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTC 551977 ||||||||| || || || | ||||||| | ||| ||| | |||||||| | ||||| Sbjct 218358 TTGCGAAAGGGCAAAGCGTGTTCTTTCAAGTTCTACACAAGCTACTATTGAGTTGGATTC 218417 Query 551978 ATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTG 552037 | | |||||| |||||||| || || | ||| |||||| |||||||| | || Sbjct 218418 CCTGTATGAGGGTATTGATTACAACACTACCATTAGTAGGGCCCGCTTTGAAGAGTTGTG 218477 Query 552038 TTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGAT 552097 | || || |||| || | | || |||||| | | || || || | | | Sbjct 218478 TAACGAGAAATTCAGAAGTACCTTGGTTCCTGTAGAAAAGGCCTTG-GA-ATCTAGTGGT 218535 Query 552098 --TGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAA 552155 ||| || || |||||||| |||| | |||||||| || || || ||||| || Sbjct 218536 CTTGACAAGAGAAAGATACATGAAGTTGTTTTGGTTGGTGGTTCCACCAGGATTCCCAAG 218595 Query 552156 ATTCGCGAAATGTTAA-GTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT--AAT 552212 |||| || | ||| | ||| ||| ||||||||| || || | || | || Sbjct 218596 ATTCAACAACTCATAAAGGGCTTCTTT-AATGGTAAAGAACCG--TGCAGGTCTATCAAC 218652 Query 552213 CCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA---CAA 552269 |||||||||||||| || ||||| || || | ||||| |||||||| ||||| || Sbjct 218653 CCAGATGAGGCTGTAGCTTATGGCGCTGCTGTACAAGCTGCTATTCTGTCTGGTAACCAG 218712 Query 552270 ACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTA 552329 |||| ||||| | | || | |||| ||| |||||| | || |||| |||||||| Sbjct 218713 TCTGA-GAAAATCCAGGAACTTTTGTTGTTG--GATGTTGCACCATTATCCCTTGGTTTG 218769 Query 552330 GAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAA 552389 ||||| | ||| ||| |||||||| ||||||| | | || || || |||||| || Sbjct 218770 GAAACTGCTGGTGGTGTTATGACTGTTCTTATCAAGCGTAACACCACAATTCCTACAAAG 218829 Query 552390 AAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTT 552449 ||| || |||| | || | |||| ||||| | || || ||| ||||| Sbjct 218830 AAAAATCAGATATTCACGACCAACGAAGATCATCAAGAAGGAGTCCTTATCCAAGTTTTT 218889 Query 552450 GAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGT 552509 ||||| ||||| | || || |||||||||| ||||||| || | || || Sbjct 218890 GAAGGTGAAAGGGCTATGACCAAGGATAATAATCTTCTTGGTAAATTCCACTTGAGTGGC 218949 Query 552510 ATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAAT 552569 ||| |||| || |||||||| || || ||||||||||| || || ||||| ||||| ||| Sbjct 218950 ATTGCTCCGGCACCTCGTGGTGTCCCACAAATTGAAGTCACATTTGATATTGATGCTAAT 219009 Query 552570 GGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||||||||||| || |||||| ||||| || Sbjct 219010 GGAATTTTGAACGTCACTGCTATGGATAAGTC 219041 Score = 228 bits (252), Expect = 7e-54 Identities = 384/550 (70%), Gaps = 7/550 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| ||||| ||||| || ||||| || ||||| | ||| | | || || Sbjct 217570 GCTATTGGTATTGATTTGGGTACCACGTACTCATGTGTCGCTGTATATAAGGATAACAAT 217629 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| || ||| | ||||| |||||||| |||| || || ||||||||| | ||||| Sbjct 217630 GTTGAGATCATTCCAAATGACCAAGGTAATCGAACAACGCCTTCTTATGTTGCCTTCACT 217689 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | |||||||||| || ||| |||||| | |||| || || Sbjct 217690 GACACTGAGCGTCTGATTGGTGATGCCGCCAAAAATCAAGAGGCGCGTAACCCAGAAAAC 217749 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 |||||||| |||||||| | || ||||| |||| ||| ||||| ||||| || | Sbjct 217750 ACTATTTTCGATGCTAAGAGGTTGATTGGCAGAAAGTTTGATGATAAAACTGTACAAGAT 217809 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC---TGGAAAACCTTATATTGAA 550288 ||||||||||| ||||| ||| | || |||| | ||||| ||| |||||||| Sbjct 217810 GATATGAAGCACTGGCCATTCAAGGTTACCAATGGCCCAAGCGGAAAGCCTAATATTGAA 217869 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCAC-CAGAACAAATTTCATCTATGGTTTT 550347 | ||| | | ||| || || | || ||| | ||| | || || ||||||| | Sbjct 217870 GTTAC-CTTCCAGGGTCAAAAGAAGACATTCCACGCCGAAGAGATCTCCAGTATGGTTCT 217928 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAA 550406 || |||||||| | | || || | |||| |||| | | | |||||| || | Sbjct 217929 TATTAAAATGAAGGAGATTGCTGAAGC-ATACTTGGGTAAGACGATCAAGGATGCTGTCA 217987 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| || || ||||| ||||| || |||||||||||||| || |||||||| | Sbjct 217988 TTACTGTCCCCGCCTATTTCAATGATTCCCAACGTCAAGCTACCAAGGATGCTGGTACAA 218047 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || | |||||| | | ||||| |||||||| || || ||||| | || |||| Sbjct 218048 TTGCCGGGTTGAATGTTATGAGAATTATTAATGAACCCACCGCAGCTGCTATCGCCTATG 218107 Query 550527 GACTTGATAA 550536 | | ||||| Sbjct 218108 GTTTGGATAA 218117 Score = 118 bits (130), Expect = 9e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| ||||| ||||||||||| |||||||| |||||| Sbjct 1660510 GCTGTCATCACTGTCCCTGCCTATTTCAATGATTCACAACGTCAGGCTACTAAGGATGCT 1660451 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| || ||||| || |||| || | ||||||||||| || ||||| || || || Sbjct 1660450 GGAAAAATCGCTGGCCTAGATGTACTCAGAATTATCAATGAGCCCACTGCCGCAGCTCTA 1660391 Query 550520 GCATATGGACTTGATAAACA 550539 || | ||||||||| ||||| Sbjct 1660390 GCTTTTGGACTTGACAAACA 1660371 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 429293 ACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACATTT 429352 |||||||| |||||||| |||||||| || ||||| | ||||| |||| |||| | Sbjct 790956 ACATTCAACAACTTTCCCTTGAGTGGAAAAACTCCATATTTATCTCTTCCAACAACAGAT 791015 Query 429353 AGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 | || | || | ||||||||||||| ||||| || ||||| ||||||||||| Sbjct 791016 AACCCTGCCAAACAAGAAGTTTTAGCTGAGTCTCCCTCGGTCAATATAAGTGTACA 791071 >seq3 Length=2150608 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 || |||| | | ||| | || ||||| || || ||||||||||| || |||||||| ||| Sbjct 1735408 GAGGTTAAGAAGGCAATTATCACTGTCCCTGCCTATTTTAATGATTCTCAACGTCAGGCT 1735349 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 ||||| |||||||| ||||| || | |||| |||||||||||||||| || ||| Sbjct 1735348 ACTAAGGATGCTGGTACAATTGCCGGTTTGGATGTGGTTCGTATTATCAATGAGCCAACT 1735289 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || |||| ||||| |||| || Sbjct 1735288 GCTGCCGCTATTGCCTATGGTATTGACAA 1735260 >seq2 Length=1844256 Score = 107 bits (118), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| ||||| || || ||| |||||||||| | || | | || || | Sbjct 535050 CAAG-TGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCA 534992 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 |||| || || |||||||| | | |||||||| || ||||| || || || ||||||| Sbjct 534991 GTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAA 534932 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTAC 563446 | ||| || || ||||||||| ||| | | | ||| ||||||| || || | Sbjct 534931 TCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGC 534872 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || |||||||||||| Sbjct 534871 CAGTGAGAGTCTTTACAAAAATTTGCATA 534843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295524039410