Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 >seq2 Length=1844256 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||| |||||||| ||||||||||| | | || |||| ||| Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCC 534993 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| ||||| |||| ||||| ||||||| ||||| |||||||||||| | Sbjct 534992 AGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGA 534933 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | || | || || || | ||||| || || Sbjct 534932 ATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTG 534873 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||||||||| ||||| Sbjct 534872 CCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || |||||||| |||||||| ||||| || || ||| | ||| |||| ||| Sbjct 534824 ACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCC 534765 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||| || |||| | |||||| || | || | ||||||||||| | Sbjct 534764 AGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGA 534705 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | || | ||| ||||| | || || || || Sbjct 534704 ATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTG 534645 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||||||||| ||||| Sbjct 534644 CCAGTGAGAGTCTTTACAAAAATTTGCAT 534616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937558215907