Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 260 9e-64 seq3 143 2e-28 seq2 127 1e-23 seq5 118 7e-21 >seq1 Length=3278253 Score = 260 bits (288), Expect = 9e-64 Identities = 405/572 (71%), Gaps = 9/572 (2%) Strand=Plus/Plus Query 474311 ATATAAATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCT 474370 ||| | ||||| || || |||||||||||||| || || || ||| ||||| ||| Sbjct 217552 ATAAAGATGTCAAGTCCGGCTATTGGTATTGATTTGGGTACCACGTACTCATGTGTCGCT 217611 Query 474371 GTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCA 474430 || | | || || || || || ||| | ||||||||||||||| ||||||| || Sbjct 217612 GTATATAAGGATAACAATGTTGAGATCATTCCAAATGACCAAGGTAATCGAACAACGCCT 217671 Query 474431 TCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCT 474490 || |||||| | || ||||| ||||| | ||| ||||| ||||| || ||| |||||| Sbjct 217672 TCTTATGTTGCCTTCACTGACACTGAGCGTCTGATTGGTGATGCCGCCAAAAATCAAGAG 217731 Query 474491 GCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGAT 474550 || ||| || | || |||||||| |||||||| || |||||||| | || |||||| Sbjct 217732 GCGCGTAACCCAGAAAACACTATTTTCGATGCTAAGAGGTTGATTGGCAGAAAGTTTGAT 217791 Query 474551 GATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATG---TTGGT 474607 |||| ||||| ||| ||||||| || ||||| || ||||| | |||| | Sbjct 217792 GATAAAACTGTACAAGATGATATGAAGCACTGGCCATTCAAGGTTACCAATGGCCCAAGC 217851 Query 474608 GGTAAACCATATATAGAAGCAATACACGCAGGTGAAACTAA-ACAATTTTCAC-CGGAAC 474665 || || || |||| |||| | | ||| ||| || ||| || ||| | ||| Sbjct 217852 GGAAAGCCTAATATTGAAGTTACCTTCCAGGGTCAAAAGAAGACA--TTCCACGCCGAAG 217909 Query 474666 AAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAG 474725 | || || |||||| | |||||||| | | || |||| ||||| ||| Sbjct 217910 AGATCTCCAGTATGGTTCTTATTAAAATGAAGGAGATTGCTGAAGCATA-CTTGGGTAAG 217968 Query 474726 AAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCA 474784 | | | | ||||| || |||||||| || || ||||| |||||||| ||||||||||| Sbjct 217969 ACGATCAAGGATGCTGTCATTACTGTCCCCGCCTATTTCAATGATTCCCAACGTCAAGCT 218028 Query 474785 ACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACA 474844 || || ||||| || | |||||| || | |||||| | | |||||||||||||| || Sbjct 218029 ACCAAGGATGCTGGTACAATTGCCGGGTTGAATGTTATGAGAATTATTAATGAACCCACC 218088 Query 474845 GCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || | || |||||| | |||||||| Sbjct 218089 GCAGCTGCTATCGCCTATGGTTTGGATAAGAA 218120 Score = 152 bits (168), Expect = 3e-31 Identities = 474/718 (66%), Gaps = 22/718 (3%) Strand=Plus/Plus Query 475478 GCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACT 475537 ||| | || ||| | || || ||| ||| | || ||||| | |||||| | |||| Sbjct 218335 GCACTGAGGCGTTTGAGGACACATTGCGAAAGGGCAAAGCGTGTTCTTTCAAGTTCTACA 218394 Query 475538 CAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACA 475597 ||| ||||| |||| | ||||| || | ||| || |||||||| || ||| |||| Sbjct 218395 CAAGCTACTATTGAGTTGGATTCCCTGTATGAGGGTATTGATTACAACACTACCATTAGT 218454 Query 475598 AGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAA 475657 ||||| |||||||| | ||| || || |||| || | | || || ||| Sbjct 218455 AGGGCCCGCTTTGAAGAGTTGTGTAACGAGAAATTCAGAAGTACCTTGGTTCCTGTAGAA 218514 Query 475658 CAAGTTCTCAGAGATTCTAAA---CTTGACAAATCACAAGTCCATGAAATTGTTCTTGTA 475714 ||| || || |||| |||||||| | | | |||||| ||||| | || Sbjct 218515 -AAGGCCTTGGAA--TCTAGTGGTCTTGACAAGAGAAAGATACATGAAGTTGTTTTGGTT 218571 Query 475715 GGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAA 475774 || ||||| || || ||||| || || | || | | | |||||||||||| Sbjct 218572 GGTGGTTCCACCAGGATTCCCAAGATTCAACAACTCATAAAGGGCTTCTTTAATGGTAAA 218631 Query 475775 AAGTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAG 475832 | || | || || || || ||||| ||||| || ||||| |||||||| |||| Sbjct 218632 GAACCG--TGCAGGTCTATCAACCCAGATGAGGCTGTAGCTTATGGCGCTGCTGTACAAG 218689 Query 475833 CAGCTATTTTATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTG-ACGT 475890 | |||||| | || ||| || ||| | |||||| | | | || | |||||| | || Sbjct 218690 CTGCTATTCTGTCTGGT-AACCAGTCTGAGAAAATCCAGGAACTTTTG-TTGTTGGATGT 218747 Query 475891 AACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAG 475950 | ||| | || | ||| | ||||| | ||| || |||||||| |||||| | | Sbjct 218748 TGCACCATTATCCCTTGGTTTGGAAACTGCTGGTGGTGTTATGACTGTTCTTATCAAGCG 218807 Query 475951 AAATACTCCTATCCCATGCAAA---AAATCAAAAGTATTTTCCACTTATTCTGATAATCA 476007 || || | || || | |||| |||||| | |||| | || | ||| |||| Sbjct 218808 TAACACCACAATTCC-TACAAAGAAAAATCAGA--TATTCACGACCAACGAAGATCATCA 218864 Query 476008 AACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAA 476067 | | || |||||| | |||||||||||||| | || || |||||||| Sbjct 218865 AGAAGGAGTCCTTATCCAAGTTTTTGAAGGTGAAAGGGCTATGACCAAGGATAATAATCT 218924 Query 476068 ACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTG 476126 ||||| | || | ||||| || ||| |||| || || | || || || ||||||| Sbjct 218925 TCTTGGTAAATTCCA-CTTGAGTGGCATTGCTCCGGCACCTCGTGGTGTCCCACAAATTG 218983 Query 476127 AAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 |||| || |||||||||||||| ||||| ||| | || || |||||| ||||| || Sbjct 218984 AAGTCACATTTGATATTGATGCTAATGGAATTTTGAACGTCACTGCTATGGATAAGTC 219041 >seq3 Length=2150608 Score = 143 bits (158), Expect = 2e-28 Identities = 312/462 (68%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 475712 GTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGT 475771 || || || || || |||||||||||||| ||||||||| | ||| ||| || Sbjct 1734814 GTGGGTGGCTCTACTAGAATTCCAAAAATTAGAGAAATGATCAAGGAATACTTT---GGA 1734758 Query 475772 AAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAA 475831 || | ||| ||| | ||| | |||||||||||||| ||||| || || | || Sbjct 1734757 AAGGAACCTGATGTAAGCATTAATGCGGATGAAGCTGTTGCTTATGGCGCCGCCATGCAG 1734698 Query 475832 GCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTA 475891 | || ||| || | || |||| | | | ||| ||||| ||| | || || Sbjct 1734697 GGAGGTATATTGACTGGAGAATCCTCCCA-AGACT------TATTG--CTTCTGGATGTG 1734647 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 ||| | || | ||| | |||||| | || || |||||| || | ||||||| || Sbjct 1734646 TGCCCATTGTCTCTTGGTATCGAAACATTGGGTGGAATTATGTCTGTTATTATTGAAAGG 1734587 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 ||||| ||||| ||| |||||| | |||| ||||| | | || || ||||| Sbjct 1734586 AATACCATGATCCCTGCCAACAAATCACAGATATTCTCCACATCCACCGACAACCAAACC 1734527 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071 || || || || || |||| |||| ||||| || | || || || || | | | ||| Sbjct 1734526 ACCGTTACTATTCATGTCTTCCAAGGAGAAAGGAAGCTGACAAAGGACAACACCCACCTT 1734467 Query 476072 GGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 |||| ||| | ||||| ||| || || || || ||||||||| ||| ||||| || || Sbjct 1734466 GGAAAGTTTGA-CTTGACAGGAATACCACCAGCACCCAGAGGAACTCCACAAATCGAGGT 1734408 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || || | | ||| | ||||||||||| | ||||||||| Sbjct 1734407 CACCTTCAACGTCGATACTAATGGTATTCTAAGTGTTACTGC 1734366 Score = 123 bits (136), Expect = 2e-22 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||| | || ||||| || || ||||||||||||||||||||||| || ||||| ||||| Sbjct 1735396 GCAATTATCACTGTCCCTGCCTATTTTAATGATTCTCAACGTCAGGCTACTAAGGATGCT 1735337 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||| ||| | |||| | |||||||| ||||| ||||| || ||||| || Sbjct 1735336 GGTACAATTGCCGGTTTGGATGTGGTTCGTATTATCAATGAGCCAACTGCTGCCGCTATT 1735277 Query 474857 GCTTATGGTCTTGATAAG 474874 || |||||| |||| ||| Sbjct 1735276 GCCTATGGTATTGACAAG 1735259 >seq2 Length=1844256 Score = 127 bits (140), Expect = 1e-23 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||||| || || || || ||||||| | || | || || | Sbjct 535050 CAAG-TGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCCA 534992 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||| ||||||||||| | ||| || ||||| || ||||| || ||||||||||||| Sbjct 534991 GTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGAA 534932 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 ||||| |||||| ||||| || ||| | || | |||||| ||||| || || | Sbjct 534931 TCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTGC 534872 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||||||||| || |||||||| Sbjct 534871 CAGTGAGAGTCTTTACAAAAATTTG 534847 Score = 105 bits (116), Expect = 4e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| ||||| ||||| || || || |||||||| | ||||| | || || | Sbjct 1772185 CAAG-TGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCCA 1772127 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 ||||||| ||||||||||| | | || || || |||||||| || || ||||| |||| Sbjct 1772126 GTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGAA 1772067 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTAC 480744 |||| |||||| |||||| || || || | |||||||| || || || | Sbjct 1772066 TCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGC 1772007 Query 480745 CGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||||||||| || |||||||| Sbjct 1772006 CAGTGAGAGTCTTTACAAAAATTTG 1771982 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||| || || || ||||| | | ||||| || ||||| || || |||||| Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 |||||||||||| |||||| ||||| || || || | |||||||| || Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| || |||||||| Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTG 534619 >seq5 Length=831028 Score = 118 bits (130), Expect = 7e-21 Identities = 493/763 (65%), Gaps = 24/763 (3%) Strand=Plus/Plus Query 592131 CAAAATATATAGTTTCAAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATG 592190 || |||| |||||||||||||| | | || || || | || |||||| ||||||| Sbjct 46721 CATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATG 46780 Query 592191 GAATTTTAAATATAGCAAACACATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTAT 592250 || || | ||| ||| ||||| ||||| || ||||| |||||||| || | Sbjct 46781 GATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGT 46840 Query 592251 GGCGTAAATTTGAAACACGTGTTTTTTCTACTGGATAATAATTTACATCAATAATATTAT 592310 | || ||||||||| | | || | ||||| || || ||| |||||| || | | Sbjct 46841 GACGGAAATTTGAATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGT 46900 Query 592311 TTAAATTTCTTGTAATAATTCTTGCGACCTTGTACAATTTATTATAATC-AAACTCTGGA 592369 | ||||| |||||| | | || || |||||| | || || |||| ||| ||| Sbjct 46901 TCAAATTGTATGTAATGACACGTGAGATCTTGTAAAGCTTCTTGAAATCAAAAGTCT--- 46957 Query 592370 ACACCGTTTTCATGAATAATAAATTTAGGTAAACAAATTGATGACAAATTACAAACTGCA 592429 | || || | | ||| ||| |||||||| ||||| | ||| ||||| || ||| Sbjct 46958 TCTCC----TCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCA 47013 Query 592430 TATTCATCTGCAGATGAGAAT--TCTACAATTTCACAACAAAGATTTGAGCCATTAATTA 592487 ||| | ||| || || || | |||||||||||| || | || || || || Sbjct 47014 ACTTC-TTTGC-TATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGG 47071 Query 592488 CGCCTATATTAATCTGATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTATGGTA 592547 || | ||| | || || |||||| ||| ||||| || | | || || || Sbjct 47072 TACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATACGGCG 47131 Query 592548 CACCTGTTTCAATTTGTGTTTCCATTATTTTAAACCATAAATCTCTTGCTTTGATTTGTT 592607 ||| ||||||||||| ||| | ||| ||||||||| | | ||| || | || Sbjct 47132 TACCAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGA-TGGTC 47190 Query 592608 TTATAAATC-TACCCTCATTTTCATATTTAAGATAAGCTTTATTAAATTCTTCACCATA- 592665 ||| | ||| | | |||||| || ||| | |||||| ||||| | Sbjct 47191 TTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCCTCAAATTCATCACCCCAG 47250 Query 592666 TTTTCCTAC-AATATCTGGACATTGTGATGGACACATAAGTGACCAATTTTCATCTTTTT 592724 ||| ||| || |||| || | || | || ||||| || | ||||||||||| | Sbjct 47251 ACTTCATACAAACCTCTGCAC-TCGTCA-GGGCACATGAGAGTCCAATTTTCATTAGCCT 47308 Query 592725 CAACACGATCCATGAAAATATTATTAATCATTAATCCAAGGAATAAATCTCTGGCTCT-- 592782 |||| || | ||| || | || | ||| || || ||| | |||||| ||||| Sbjct 47309 CAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTCA 47368 Query 592783 -TTCCGTTTCAGCACCAGTATTTTTCTTTAGATCAAGGAAGAAAAATATATCACCATGCC 592841 ||| || ||||| ||||| ||||| | | ||||||||| |||||| Sbjct 47369 AATCC---TCTGCACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCC 47425 Query 592842 AAGGTTCAATAAATACCGCAAATGAACCAGCTCTTTTACCACC 592884 | || || | | ||| ||||| ||||| |||||||||||| Sbjct 47426 ATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACC 47468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178813946332