Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 147 1e-30 >seq5 Length=831028 Score = 147 bits (162), Expect = 1e-30 Identities = 291/429 (68%), Gaps = 4/429 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| ||||| || ||||| | ||||| || | |||||| ||||||| || ||| Sbjct 47319 CATAAACAAATCAGGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGC 47378 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||||| || || ||||| || | | ||| ||||| | |||||||| || ||||| Sbjct 47379 ACCGTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATA 47438 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || ||||| ||| ||||||| || || || ||||| || || | || ||| || Sbjct 47439 TATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTT 47498 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 || | |||||||||||| | ||| | || ||| ||||| | |||| | || Sbjct 47499 AAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACCCCGAATATATGA 47558 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT--TGAAATA 26230 || ||| | || | |||| || || ||||||||||| |||| ||| | Sbjct 47559 ACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGATTTGCTGATGAA 47618 Query 26231 GCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290 | ||||| | | | ||||| |||||||||| | |||| ||| ||| | || Sbjct 47619 G--GCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTGCATATCCAAC 47676 Query 26291 AAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCA 26350 |||||||| ||||| | ||| | || | ||||||| |||||||| || || ||||| Sbjct 47677 AAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGTTGGAGTAGCG 47736 Query 26351 TGAGTATAA 26359 || ||| || Sbjct 47737 TGTGTAAAA 47745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039972244675