Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 269 3e-67 >seq5 Length=831028 Score = 269 bits (298), Expect = 3e-67 Identities = 729/1106 (66%), Gaps = 22/1106 (2%) Strand=Plus/Minus Query 75496 TATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGC 75555 ||||||||| |||||||| || || |||||||| |||||||| | || | |||||| | Sbjct 47553 TATTCGGGGTACAAATGGACAGTCTAATGGTATTGTTCCAATGTTGCGTATCTTTAACAC 47494 Query 75556 CACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCA--AGGGGTCCATC-GCGGTCTACTT 75612 || || ||||| |||| | ||| || | |||||| | | || | || || Sbjct 47493 AACCGCCAAGTATGTTGATCAGGGGGGTGGTAAAAGAAGGGGTTCGTTTGCCATATATTT 47434 Query 75613 GGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGA 75672 ||| ||||||||||| ||||| | || | | || | || ||||| |||| Sbjct 47433 GGAGCCATGGCATGCGGATATATTTAAGATGTTGGATCTGCGCAAAAACCACGGTGC--- 47377 Query 75673 AGAGGCTCGGTGT---AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 ||||| | | | ||||||||||| | | || ||||| || || | || ||||| Sbjct 47376 AGAGGATTTGAGAGCAAGAGATCTCTTCTATGCGCTATGGATCCCTGATTTGTTTATGAA 47317 Query 75730 GCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAG-GCACCAGGTCTCT 75788 || ||||||| || | ||| |||| | || || ||| || ||| |||| | | Sbjct 47316 ACGCGTTGAGGCTAATGAAAATTGGACTCTCATGTGCCCTGACGAGTGCAG-AGGTTTGT 47258 Query 75789 CCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAG 75848 || | |||||| || ||||| || || ||||| ||||||||| | | ||| | Sbjct 47257 ATGAAGTCTGGGGTGATGAATTTGAGGCTCTTTACACCAAGTATGAACAAGCTGGTTTGG 47198 Query 75849 CCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAG 75907 | | ||| | || || | | ||| ||| || || | || || | || Sbjct 47197 GCCGTAAGACCATCCCCGCA-CAAAAGTTATGGTTTGCAATCTTACAAAGTCAAATTGAA 47139 Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 ||||| || || |||||||||||||||||||| || ||| || ||||||||||||| Sbjct 47138 ACTGGTACGCCGTATATGCTTTACAAGGATGCCTGCAACGCAAAATCTAACCAAAAGAAT 47079 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 |||| || || || || || | ||| |||||| || |||| || |||| | Sbjct 47078 CTGGGTACCATAAAATCTTCCAACTTGTGCTGTGAAATTGTACAGTATACTGATAGCAAA 47019 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACT 76087 || ||||| || || ||||| |||||||| | || | || ||| ||| | ||| Sbjct 47018 GAAGTTGCTGTCTGTAACTTGGCTTCAATCGCTTTACCTATGTTTGTTAATAAGGAGGAG 46959 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 |||||||||| | || ||| | | ||| || | |||| | ||| | ||| Sbjct 46958 AAGACTTTTGATTTCAAGAAGCTTTACAAGATCTCACGTGTCATTACATACAATTTGAAC 46899 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACAC 76207 | | ||||||| ||||| | || || || || || | | || ||| | || ||| Sbjct 46898 CAAATCATTGATAGAAACTACTACCCAGTGAAGGAAGCTAGGTATTCAAATTTCCGTCAC 46839 Query 76208 AGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA 76267 || ||||||||| | || ||||||||| | || ||| || || |||| ||||| || Sbjct 46838 AGGCCTATTGGTGTTGGAGTTCAAGGTTTAGCTGATACGTTCATGTTGTTGCGCTATCCA 46779 Query 76268 TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCA 76327 ||||| || |||||||||| |||| |||| ||||| |||||||| || ||| | || Sbjct 46778 TTTGAATCTGATGAAGCCAGGGAGCTGAACAAGCGTATATTTGAAACTATTTATTATGCG 46719 Query 76328 TCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGT 76387 | ||||| | | | ||||| ||| | ||| ||||| ||| | ||| Sbjct 46718 TGTCTGGATGAGTCTATCTCTTTGGCCGAAAAGTATGGTCATTATGACTCATATCCAGGT 46659 Query 76388 TCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG------AAGGTGAAACCAAG 76441 || || || || ||||| | | ||||| ||| | |||| | ||| | |||| Sbjct 46658 TCGCCTGCTTCTCAAGGTCTTTTGCAGTTCGATCTTTGGGGTGCTACTGTTGATAACAAG 46599 Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 || | |||||||||| || |||| | | || || | | ||| | | ||| | Sbjct 46598 CT---TTGGGACTGGGATGCCCTTAAGGCAAGAATGAAAAAACATGGTTTGAGAAACTCT 46542 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 | || |||| || ||||| || ||||| ||| | || || ||||| |||||||||| Sbjct 46541 TTATTCTTGGCTCCTATGCCTACTGCCTCTACCTCTCAGATTTTGGGAAATAATGAATCT 46482 Query 76562 TTTGAACCATACACAACAAACATCTA 76587 || || ||||| || | |||||||| Sbjct 46481 TTCGAGCCATATACTAGTAACATCTA 46456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569532885920