Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 102 2e-16 >seq2 Length=1844256 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 49814 ATATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 ||| || || ||| ||||||| | |||||| || || ||||||||||| | |||||| || Sbjct 638189 ATAAATAAAGCATCCAAAATCTGCATGTAATCCTTCATCCCTAGATATGAGTTCATTGCT 638248 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || || | |||||||| ||||| |||||||| | ||| |||| || |||||| | Sbjct 638249 GAAGGTCAGACCTGGCATCAATCCCCTCTTTTTCAACCAGAATAATGCACAAAAACTTCC 638308 Query 49934 AGAAAAGAATATACCCTCGAC 49954 ||||| || || ||||| || Sbjct 638309 GGAAAACAAAATTCCCTCAAC 638329 Score = 96.9 bits (106), Expect = 7e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 || || || | |||| ||| ||| || || || |||||||| ||||| ||| | || || Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGA-ATGTTGTAATCAGACAATGTACGTCCGTCCTC 534994 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || ||| ||||||||||| || || | ||| ||||| || || || || || || ||||| Sbjct 534993 CAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTG 534934 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || || ||||| || | || | ||| ||||| ||||||||||| || Sbjct 534933 AATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTT 534874 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | ||| || ||||| Sbjct 534873 GCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479886477150