Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 >seq2 Length=1844256 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182 || ||| ||||||| | |||||| ||||| ||||||||||| | |||||| || || || Sbjct 638196 AAGCATCCAAAATCTGCATGTAATCCTTCATCCCTAGATATGAGTTCATTGCTGAAGGTC 638255 Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242 | |||||||| ||||| |||||||| | ||| |||| || |||||| | ||||| Sbjct 638256 AGACCTGGCATCAATCCCCTCTTTTTCAACCAGAATAATGCACAAAAACTTCCGGAAAAC 638315 Query 39243 AATATACCCTCCAC 39256 || || ||||| || Sbjct 638316 AAAATTCCCTCAAC 638329 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || | |||| ||| || ||| || ||||| || || | ||| |||| ||| Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCC 534993 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| |||||||||||||| || | ||| || || || || || || || || ||||| Sbjct 534992 AGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCTTGA 534933 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || ||||| || || || | ||| ||||| ||||||||||| || Sbjct 534932 ATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGGTCTTG 534873 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || | || || ||||| Sbjct 534872 CCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135898172200