Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 154 4e-32 seq5 136 1e-26 seq3 89.7 2e-12 >seq1 Length=3278253 Score = 154 bits (170), Expect = 4e-32 Identities = 336/497 (68%), Gaps = 6/497 (1%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||| | |||||| | || || || ||||| || || | ||| || || Sbjct 726160 CTATCAAATCGACCGGGACGAGTAAGAGCAGGATCCAATATGTCAGCGCGGTTAGTACCT 726219 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 |||||||||| || | | | || |||||||||||||| |||| ||| || Sbjct 726220 GCCAATACAATAACACCTGTGCTTGTTTTAAATCCATCCATTTCAACCAAAAGTTGGTTT 726279 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCG--AATCGCTCCtttttt 289027 | || | ||| ||||||||||| | ||| | |||| ||||| | | | ||||||| Sbjct 726280 AACGTGTTTTCTCTTTCATCATTAGCACCGCCTGAA-AACCCGCCTTTTGAT-CTTTTTT 726337 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| || ||||||||||| || || || || | | || | ||| | || || | Sbjct 726338 TACCGACCGCATCAATTTCATCTATAAATATGATCGATGGTGCATTCTTCCTAGCTTTCT 726397 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | || | ||||| |||| || | || || ||| ||| | ||| ||| Sbjct 726398 CAAAGAGGTCACGCACACGTGATGGGCCTACGCCGACGAACACTTCAATAAAATCACTTC 726457 Query 289148 CGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| | | |||| |||| |||||||||||| ||||| ||||| | |||| || || Sbjct 726458 CGGACA-TGGAATAAAATGGTACATTTGCTTCACCTGCCACTGCTTTGGCCAACAGGGTT 726516 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || ||||| || || ||| ||||| || || ||||||| |||||| ||| || Sbjct 726517 TTTCCTGTGCCTGGATCTCCACATAATAAGACACCTTTTGGTATTTTTGCTCCAAATGAT 726576 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| ||| || | ||||| || |||| ||| | ||| ||| |||||| Sbjct 726577 TCGTATCTCTGGGGATTACGCAAAAAATCGACAAATTCACTGATTTCTCTTTTCGCCTCA 726636 Query 289327 TCACATCCTGCTACATC 289343 | ||| |||||||| Sbjct 726637 TGCATTCCAGCTACATC 726653 >seq5 Length=831028 Score = 136 bits (150), Expect = 1e-26 Identities = 768/1218 (63%), Gaps = 20/1218 (2%) Strand=Plus/Plus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 |||||| |||| ||||||| || ||||| ||| || || | | || || ||| Sbjct 46711 TCCAGACACGCATAATAAATAGTTTCAAATATACGCTTGTTCAGCTCCCTGGCTTCATCA 46770 Query 155373 GATGTAAATGCGATATC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACC 155431 ||| ||||| |||| | || | | || || || |||||||| |||||||||| ||| Sbjct 46771 GATTCAAATG-GATAGCGCAACAACATGAACGTATCAGCTAAACCTTGAACTCCAACACC 46829 Query 155432 GACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTTTGGGTAAAAATTCACATC 155491 | || | || | | |||| || | | ||| |||||| | || ||| Sbjct 46830 AATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTCACTGGGTAGTAGTTTCTATC 46889 Query 155492 AATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT--TTCACATAG 155549 ||| || | || ||||| ||| ||| | | | | ||| ||| ||| | Sbjct 46890 AATGATTTGGTTCAAATT-GTATGTAATGACACG-TGAGATCTTGTAAAGCTTCTTGAAA 46947 Query 155550 TCAAATGTTTTATCCTC---ATTTACAAACATACCAAGACCAATAGACGCCAGATTACAT 155606 ||||| || || ||||| ||| ||||||||| | | | || || |||| ||||| Sbjct 46948 TCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAG 47007 Query 155607 ACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTG 155666 || ||| || ||| || | || | |||||| |||||||||| ||| ||| || Sbjct 47008 ACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTT 47067 Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 ||||| || | |||||| ||||||||||| ||| || ||||||||||| || || || Sbjct 47068 ATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCCTTGTAAAGCATATAC 47127 Query 155727 GGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT 155786 || || || || || || || | | || | ||| | | | || || Sbjct 47128 GGCGTACCAGTTTCAATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATG 47187 Query 155787 TGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCG 155846 ||| | || | ||||| || | || || | | || ||||| Sbjct 47188 GTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAGCCTCAAATTCATCACCC 47247 Query 155847 TAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCG 155906 | ||| || || ||||| || ||||| | || | |||| ||| |||| | Sbjct 47248 CAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCC 47307 Query 155907 ATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTT 155966 || || | |||||| | |||| ||| | |||||||| || || ||||| | Sbjct 47308 TCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTC 47367 Query 155967 GACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATAT--CAGGATGGT 156024 | ||||| | ||||| || || || || || || | || | ||||| | | ||| Sbjct 47368 AAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACA--TCTTAAATATATCCGCATGCC 47425 Query 156025 GTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACC 156081 |||||||| ||| || ||||| ||| | || || |||||| ||||| |||||| Sbjct 47426 ATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACT 47485 Query 156082 GAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTC 156141 || || | || |||| || | ||| |||| ||||||||| || ||||| || | Sbjct 47486 TGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTAC 47545 Query 156142 CGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACC 156201 | ||||||| |||||| | || | || ||||| || || || ||||| | Sbjct 47546 CCCGAATATATGAACCACTCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTG 47605 Query 156202 ATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTT 156261 |||| || || || | | | | ||||||||||| ||| ||| ||||||||||| Sbjct 47606 ATTTGCTGATGAAGGCACACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTT 47665 Query 156262 CCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTG 156321 ||| | | | | || ||| | ||| || || ||||| || || ||||| | Sbjct 47666 GCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCG 47725 Query 156322 TAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTT 156379 | || || || || ||||| |||| | ||| | | |||||| || || | | Sbjct 47726 TTGGAGTAGCGTGTGTAAAAAACTTTTGGCTCATTAAGTGGTATGTTTCAACTGTACGT- 47784 Query 156380 CTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTC 156439 || | || | | ||| || | ||||| | ||| |||| || ||||| || || Sbjct 47785 -TCGACATCACCACAGTGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTC 47843 Query 156440 TACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||| | | |||| | || | |||||||| |||||||| || || || Sbjct 47844 CACGATCTTGTTGTTGGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTA 47903 Query 156500 ATCAAACAGAAAATCACG 156517 ||| || |||||||||| Sbjct 47904 ATCGTACTGAAAATCACG 47921 >seq3 Length=2150608 Score = 89.7 bits (98), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||| | ||| ||||| |||| | |||||| ||| | || || Sbjct 1453861 CCAACTGCATCCAATTCATCAATAAAAACAATACACGGGGAAACAGAGCGTGCTGTTTTG 1453920 Query 289090 AATAATTCTCTTA---CACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||||||||||| |||| || || | ||| ||| |||||||| ||||||| || Sbjct 1453921 AATAATTCTCTTATTCTACGG---GCACCCACACCCACAAACATTTCTTCAAATTCTGAG 1453977 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || ||||| || | || ||||| |||||||||||||| |||| || || Sbjct 1453978 CCAGAAGAGTGAATAAACGGAACTCCAGCTTCACCTGCTACTGCCCTGGCCAACAGGGTT 1454037 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || || || ||||| || |||||| | ||| ||||||| ||| || ||| Sbjct 1454038 TTCCCAGTACCAGGACTCCCAGCTAATAATATTCCTTTTGGTAATTTCGCTCCA 1454091 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| | | || |||||||| | || | ||| | || |||||||||||||| | Sbjct 1143669 TATCCATACGAAGATTGAAATTTGTAGCGTATACACCCATGGCTTGCTTTCCCATAGCGC 1143610 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAA 252649 | || || |||||||||||||||||||| | || ||||| || || || || || Sbjct 1143609 TTTGATAGGTATTTCTGGGAGACTGATTCTGATCGGGGAATGGTATAATCGACGCACAAA 1143550 Query 252650 CACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 |||| || || | ||| || || ||||||||| Sbjct 1143549 CACCCAAAATCATAGATGGATGGATCTCACAGTGA 1143515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817430281033