Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-16 >seq1 Length=3278253 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || ||||| |||||| |||||| ||| ||| | | Sbjct 1977310 TGTACTTGGTGACGGCCTTGGTGCCTTCAGAGACAGCGTGCTTGGCCAATTCTCCGGGAA 1977369 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || |||||||| || | || || ||| |||||| || Sbjct 1977370 GAAGAAGACGTACGGCAGTTTGGATCTCACGTGAGCTGAGTGTGGACTTCTTGTTGTAGC 1977429 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || ||| || ||| | | | ||| | || || |||| ||| |||||| Sbjct 1977430 GAATGAGACGTGTGGCTTCAAGTG-CAAGTCTGTCAAAAATATCATTGATAAAGGAGTTC 1977488 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || || ||| || || ||| || || ||||||||||| ||||| | ||| ||| Sbjct 1977489 ATAATGCTCATGGACTTCTTGCTGACACCAGTCTCGGGGTGCACTTGCTTCAACACTTTG 1977548 Query 1485709 TAAA 1485712 |||| Sbjct 1977549 TAAA 1977552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245442628951