Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 138 9e-28 >seq2 Length=1844256 Score = 138 bits (152), Expect = 9e-28 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATC 29633 || ||||| ||||| || || ||||||||||| ||||| | ||||| | || || Sbjct 535055 AGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATG-TACGTCCGTC 534997 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | ||||| | ||||||||||| ||||| ||||| ||||| Sbjct 534996 CTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTC 534937 Query 29694 TTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| ||| |||| |||||| | || | |||||| | |||| ||||||||||| || | Sbjct 534936 TTG-AATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATGG 534878 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| | || || ||||| || ||||| Sbjct 534877 TCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| || || ||||||||||||||||||| | || ||| || Sbjct 1772190 AGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCC 1772131 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||| || |||||| | ||||| || ||||| || || ||||| ||||||||||| Sbjct 1772130 TCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCC 1772071 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | |||||| |||| | ||||| | || || ||||| || || || Sbjct 1772070 TG-AATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 1772012 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| | || || ||||| || ||||| || Sbjct 1772011 CTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| ||| || ||||||||||| || || | | |||||| || Sbjct 534827 AGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCC 534768 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||||||||| || | ||||| || || || || || || |||||||| |||||| Sbjct 534767 TCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCT 534708 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| |||||| | || | ||||| | || || ||||| || || || Sbjct 534707 TG-AATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 534649 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| | || || ||||| || ||||| || Sbjct 534648 CTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219157746269