Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 430 1e-114 seq3 111 1e-18 >seq1 Length=3278253 Score = 430 bits (476), Expect = 1e-114 Identities = 1061/1586 (67%), Gaps = 50/1586 (3%) Strand=Plus/Minus Query 281322 ATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTAT 281381 ||| || |||||| | ||| | ||||||| | | || |||||||| || || Sbjct 219133 ATTTTTCAGCTTCCTGGACCATACGGTCAATTTCTTGCTGTGATAATCTTCCCTTATCAT 219074 Query 281382 TAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAA 281441 |||| || || | || || ||||| || || ||||| ||||| || || | || Sbjct 219073 TAGTGATCGTGACATGCTCCGATTTTCCGGTGGACTTATCCATAGCAGTGACGTTCAAAA 219014 Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 | ||||| ||||| | ||||||||||||||||||||| ||||| || | | || || | Sbjct 219013 TTCCATTAGCATCAATATCAAATGTGACTTCAATTTGTGGGACACCACGAGGTGCCGGAG 218954 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 || || ||| | ||| | || ||| ||||||||| || || | | ||||| Sbjct 218953 CAATGCCACTCAAGTGGAATTTACCAAGAAGATTATTATCCTTGGTCATAGCCCTTTCAC 218894 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 | || |||| ||||||| ||| | ||||| |||| | || || |||| |||| Sbjct 218893 CTTCAAAAACTTGGATAAGGACTCCTTCTTGATGATCTTCGTTGGTCGTGAATA-TCTGA 218835 Query 281622 ATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 |||| || ||||||||| ||||| | | |||| | ||||||| ||||||||| Sbjct 218834 TTTTTCTTTGTAGGAATTGTGGTGTTACGCTTGATAAGAACAGTCATAACACCACCAGCA 218775 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||| |||||||| || | || | ||||| | | |||| | || | ||||| Sbjct 218774 GTTTCCAAACCAAGGGATAATGGTGCAACATCCAACA--ACAAAAGTTCCTGGATTTTC- 218718 Query 281741 TCAGTTTG---ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 |||| || |||| |||||||| ||||| | |||||| ||||| || ||||| ||| Sbjct 218717 TCAGACTGGTTACCAGACAGAATAGCAGCTTGTACAGCAGCGCCATAAGCTACAGCCTCA 218658 Query 281798 TCAGGATTAACAGTTTCATTTA--GTTTTTTACCATTGAAAAAA---TTTGAAAGAAGTT 281852 || || || | || | | | ||| ||||||||| || || ||| | |||| Sbjct 218657 TCTGGGTTGATAGA--CCTGCACGGTTCTTTACCATTAAAGAAGCCCTTT---ATGAGTT 218603 Query 281853 GTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 281912 || | ||| ||||| | | || || ||||| || |||| |||||| | || | | Sbjct 218602 GTTGAATCTTGGGAATCCTGGTGGAACCACCAACCAAAACAACTTCATGTATCTTTCTCT 218543 Query 281913 TATCCAGTT---TTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 | || || | || ||||| | ||||| || || | | | ||| || Sbjct 218542 TGTCAAGACCACTAGATTCCAAGG---CCTTTTCTACAGGAACCAAGGTACTTCTGAATT 218486 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 || ||| | ||||| || || ||| ||| || || |||||||| || | Sbjct 218485 TCTCGTTACACAACTCTTCAAAGCGGGCCCTACTAATGGTAGTGTTGTAATCAATACCCT 218426 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | ||| ||||| | ||||| |||| ||| || ||| || || |||| || || | Sbjct 218425 CATACAGGGAATCCAACTCAATAGTAGCTTGTGTAGAACTTGAAAGAACACGCTTTGCCC 218366 Query 282090 GTTCACATGCTGTCCTTA---GTCTTCGTA-AGGCTT--TTGCTGATTGATTCAAATCTG 282143 ||| || |||||| | | || || | |||| ||| |||| |||| | | Sbjct 218365 TTTCGCAATGTGTCCTCAAACGCCTCAGTGCACGCTTGTTTGTTGATAGATTTTTACCA- 218307 Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTATCAAAATC 282201 |||| | | | |||| || ||||| ||||| || | | |||| ||||| || Sbjct 218306 --TTATTTAGACGCATGAAGTCACGGACACA--ATGTTCCACCAAAAGATTGTCAAAGTC 218251 Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 282261 || |||||||| | |||| || | ||||| | || | |||| |||||||||| Sbjct 218250 CTCGCCTCCCAAGTGGGTATCACCAGCGGTAGCCTTAACCTCAAAAATACCATCTTCAAT 218191 Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 | || || | |||||||| |||||||||||| | ||| ||||| | |||||| | || Sbjct 218190 TGTCAGAATACTAACATCAAAGGTTCCACCACCGAGATCGAAAATCAAAACATTCTTCTC 218131 Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 | | || ||||| | |||||| || | |||||| || || |||||||||||||| Sbjct 218130 AGAGCCGCTCTTCTTATCCAAACCATAGGCGATAGCAGCTGCGGTGGGTTCATTAATAAT 218071 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 ||||| |||||| | || |||||| | || ||||| || || ||||| | ||| ||||| Sbjct 218070 TCTCATAACATTCAACCCGGCAATTGTACCAGCATCCTTGGTAGCTTGACGTTGGGAATC 218011 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTTTCCAA-TATAAGCG 282499 || ||||| || || |||||||| || ||||| | | | |||| |||| ||| | Sbjct 218010 ATTGAAATAGGCGGGGACAGTAATGACAGCATCCTTGATCGTCTTACCCAAGTAT----G 217955 Query 282500 CTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG-GAGAATAT 282556 ||| || | | ||||||||| | | || ||| || || | ||| | | | | || Sbjct 217954 CTTCAGCAATCTCCTTCATTTTAATAAGAACCATACTGGAGATCTCTTCGGCGTGGA-AT 217896 Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATA 282613 ||| || | || | | ||||||| || || || | |||| || Sbjct 217895 GTCTTCTTTTGACCCTGGAAGGTAACTTCAATATTAGGCTTTCCGCTTGGGCCATTGGTA 217836 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || || |||||||| | |||||||| ||| ||| ||| |||| ||| | ||| ||| Sbjct 217835 ACCTTGAATGGCCAGTGCTTCATATCATCTTGTACAGTTTTATCATCAAACTTTCTGCCA 217776 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || || | || ||||| |||||||| || ||| ||| || |||||| |||||| Sbjct 217775 ATCAACCTCTTAGCATCGAAAATAGTGTTTTCTGGGTTACGCGCCTCTTGATTTTTGGCG 217716 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| ||||||||| | || || || || || | |||||| || || ||||| |||||| Sbjct 217715 GCATCACCAATCAGACGCTCAGTGTCAGTGAAGGCAACATAAGAAGGCGTTGTTCGATTA 217656 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 ||||| ||||| | ||| || ||||| || || | ||||| | ||||| | Sbjct 217655 CCTTGGTCATTTGGAATGATCTCAACATTGTTATCCTTATATACAGCGACACATGAGTAC 217596 Query 282854 GTTGTTCCTAAATCAATACCAATAGC 282879 || || || ||||||||||||||||| Sbjct 217595 GTGGTACCCAAATCAATACCAATAGC 217570 Score = 98.7 bits (108), Expect = 7e-15 Identities = 102/130 (78%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCC---TT 400353 ||||| || || ||||| |||||||| ||||||||||| | || ||| |||| || Sbjct 791071 TGTACACTTATATTGACCGAGGGAGACTCAGCTAAAACTT---CT-TGTTTGGCAGGGTT 791016 Query 400354 AA-TGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 400412 | |||| ||||||||||| | ||||||||||| ||||| | ||||| | |||||||| Sbjct 791015 ATCTGTTGTTGGAAGAGATAAATATGGAGTTTTTCCACTCAAGGGAAAGTTGTTGAATGT 790956 Query 400413 TAGGGATGCT 400422 ||| |||||| Sbjct 790955 TAGAGATGCT 790946 >seq3 Length=2150608 Score = 111 bits (122), Expect = 1e-18 Identities = 193/277 (70%), Gaps = 9/277 (3%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| |||||||||||||| | ||| | || || | |||| |||| ||| Sbjct 1735122 TCAAAGTCTTCACCTCCCAAATGAGTGTCACCACCAGTTCCAACGACTTCAAAAACGCCA 1735181 Query 282254 TCTTCAAGAGACAAAAG---AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 || | ||||||| || ||||||| ||| |||||||| | ||| | | | Sbjct 1735182 GAGTCTA---ACAAAAGCAAAGAAACATCAAAGGTACCACCACCTAAATCGTACACTAAA 1735238 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | ||| |||| | ||| || |||| |||||| |||| ||| ||||||||||| Sbjct 1735239 ATGTTCGATTCTACAT--TGGCCTTG-TCAATACCATAGGCAATAGCGGCAGCAGTTGGC 1735295 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| ||||| | | |||| | ||| |||||| | || ||||| ||||| || || Sbjct 1735296 TCATTGATAATACGAACCACATCCAAACCGGCAATTGTACCAGCATCCTTAGTAGCCTGA 1735355 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 282467 | ||| ||||| |||||||| ||||| ||||| |||| Sbjct 1735356 CGTTGAGAATCATTAAAATAGGCAGGGACAGTGATAA 1735392 Score = 96.9 bits (106), Expect = 3e-14 Identities = 262/396 (66%), Gaps = 19/396 (5%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| |||||| ||| | ||||||||||| | ||| | | || ||||| || ||| Sbjct 1734357 TTTTCATGGGCAGTAACACTTAGAATACCATTAGTATCGACGTTGAAGGTGACCTCGATT 1734416 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || ||||| | || ||||| || ||| ||| | ||| |||| || | | Sbjct 1734417 TGTGGAGTTCCTCTGGGTGCTGGTGGTATTCCTGTCAAGTCAAACTTTCCAAGGTGGGTG 1734476 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | || | ||| || | ||| | || |||||||| ||||| || Sbjct 1734477 TTGTCCTTTGTCAGCTTCCTTTCTCCTTGGAAGACATGAATAGTAACGGTGGTTTGGTTG 1734536 Query 281597 TCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAAT 281655 || | | || | |||| |||| ||||| || ||| || | || || || ||||| Sbjct 1734537 TCGGTGGATGTGGAGAATA-TCTGTGATTTGTTGGCAGGGATCATGGTATTCCTTTCAAT 1734595 Query 281656 AATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAAC 281715 |||| | |||||| ||||| |||||| | ||||||||| | || ||||| | Sbjct 1734596 AATAACAGACATAATTCCACCCAATGTTTCGATACCAAGAGACAATGGGCACACATCCAG 1734655 Query 281716 TAGGACAATA----TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAA 281771 || ||||| || || | || || |||| ||| ||| || | || | Sbjct 1734656 AAG--CAATAAGTCTTGGGAGGATTCTC--CAGT-----CAA----TATACCTCCCTGCA 1734702 Query 281772 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAA 281807 | || || ||||| |||||||||||||| | ||||| Sbjct 1734703 TGGCGGCGCCATAAGCAACAGCTTCATCCGCATTAA 1734738 Score = 95.1 bits (104), Expect = 9e-14 Identities = 224/333 (67%), Gaps = 24/333 (7%) Strand=Plus/Plus Query 85929 ATCAATT--AGAATATGGTTCATTATCAAATAGTCAAAATCTTCTCCTCCCAAATGTGTA 85986 ||||||| | || ||||| ||||| | |||||| ||||| ||||||||||| || Sbjct 1735089 ATCAATTTAACAAAATGGTCCATTACTCTACGGTCAAAGTCTTCACCTCCCAAATGAGTG 1735148 Query 85987 TTACCACCTACTGCCAATG--TTCTAAATACTCCA---TTTGAGATATTCATTAACGAAA 86041 | |||||| | | |||| | ||| ||| || ||| | | | | | || | |||| Sbjct 1735149 TCACCACC-AGTTCCAACGACTTCAAAA-ACGCCAGAGTCTAACAAAAGCA---AAGAAA 1735203 Query 86042 CATCTAATGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttATTCC 86101 |||| || || ||| | ||||| || || || | | ||| | || | ||| Sbjct 1735204 CATCAAAGGTACCACCACCTAAATCGTACACTAAAATGTTC------GATTCTACATTGG 1735257 Query 86102 ATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAA 86161 || ||| | ||| || |||| ||| || |||||||| ||||| || || || Sbjct 1735258 CCTTGTCAAT------ACCATAGGCAATAGCGGCAGCAGTTGGCTCATTGATAATACGAA 1735311 Query 86162 GAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAA 86221 ||||| ||||| |||||| || ||| ||| ||| || || | || | ||||||| Sbjct 1735312 CCACATCCAAACCGGCAATTGTACCAGCATCCTTAGTAGCCTGACGTTGAGAATCATTAA 1735371 Query 86222 AATATGCTGGTACAGTAATAACTGCTTTATTAA 86254 |||| || || ||||| |||| ||| || |||| Sbjct 1735372 AATAGGCAGGGACAGTGATAATTGCCTTCTTAA 1735404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629958138034