Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 >seq2 Length=1844256 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | ||| | ||||| ||||| |||||| || || || || || |||||||| Sbjct 535071 ACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGA 535012 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | ||||| || ||||| || |||||||| || | | || ||||| || || Sbjct 535011 CAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGG 534952 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| |||||||||||||| || ||||| ||||| || ||| ||||||| || Sbjct 534951 AATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAAC 534892 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||| || |||||||| || | ||||||||||| || ||||| Sbjct 534891 TTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 152 bits (168), Expect = 1e-31 Identities = 192/263 (73%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| | ||||| ||||| ||||| || || || || || || || | Sbjct 534844 TACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTG 534785 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||| || |||||||| || || || || | || ||||| ||||||| Sbjct 534784 AGAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAG 534725 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| |||||||||||||| || ||||| |||||||| || | || || | Sbjct 534724 GGATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGA 534665 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC--ATTATTATATT 82819 | || | || || |||||||| || | ||||||||||| || ||| ||| ||||| Sbjct 534664 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATTGGTATATC 534605 Query 82820 TTTCTACTAAACACGTGTATTAA 82842 ||| || || ||||||| || Sbjct 534604 TTTATAGAAATGCCGTGTATGAA 534582 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| | ||||| ||||| |||||| || || || || |||||||| | Sbjct 1772207 TACCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCG 1772148 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||| || ||||| || |||||||| || | || || || ||||||| Sbjct 1772147 AGAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAG 1772088 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || || |||||||| || || ||||||||||| || || | || || | Sbjct 1772087 GAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGA 1772028 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | || | || || |||||||| || | ||||||||||| || ||||| | |||| || Sbjct 1772027 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTTGATATATT 1771968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827086783051