Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 149 1e-30 seq3 100 7e-16 >seq5 Length=831028 Score = 149 bits (164), Expect = 1e-30 Identities = 563/874 (64%), Gaps = 12/874 (1%) Strand=Plus/Minus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || || ||||| || ||||| | ||||| | ||||| | ||| ||| | ||||| Sbjct 47906 GATTACTTTGGATTTAAAACATTGGAACGCTCGTATTTGTTGCGTACCAACAACAAGATC 47847 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | ||||| |||||||||||||| | ||||| | || || || | |||| | Sbjct 47846 GTGGAACGCCCTCAACACATGTTAATGCGTGTCTCCGCGGGAATCCACTGTGGTGATGTC 47787 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 || | ||||| || | || | || ||||| || || |||||||| Sbjct 47786 GAACGTACAGTTGAAACATACCACTTAATGAGCCAAAAGTTTTTTACACACGCTACTCCA 47727 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-AT 110539 || |||||||| |||||||| ||| | |||| || |||| || ||| || | ||| || Sbjct 47726 ACGCTATTTAATGCAGGAACCAATCGCCCACAAATGTCTTCCTGTTTT-TTGTTGGATAT 47668 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAA 110599 | ||||||||| ||| ||| |||| || | || | | ||| | || || Sbjct 47667 GCAAGATGATTCTCTTGCAGGAATTTTCAATACACTGACGCAGTGTGCCTTCATCAGCAA 47608 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATAT-CG 110658 | |||| ||||| || || |||| | || || | | || || |||| || Sbjct 47607 ATCAGCTGGTGGAATAGGCCTTGCAATTCACAAAATACGTGCGAGTGGTTCATATATTCG 47548 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || || || | ||| ||||||||||||| | |||| ||| || | Sbjct 47547 GGGTA-CAAATGGACAGTCTAATGGTATTGTTCCAATGTTGCGTATCTTTAACACAACCG 47489 Query 110719 CAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAAC 110775 | || ||||| |||| |||||||| |||| || || ||||| || ||| | || | Sbjct 47488 CCAAGTATGTTGATCAGGGGGGTGGTAAAAGAAGGGGTTCGTTTGCCATATATTTGGAGC 47429 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 | |||||| | ||||||||| | | || || || || ||||| || || || || Sbjct 47428 CATGGCATGCGGATATATTTAAGATGTTGGATCTGCGCAAAAACCACGGTGCAGAGGATT 47369 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 |||||| | ||| | || ||||| | ||||| | ||||| || |||||||| ||| Sbjct 47368 TGAGAGCAAGAGATCTCTTCTATGCGCTATGGATCCCTGATTTGTTTATGAAACGCGTTG 47309 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | | |||| | ||| |||| ||||| ||| | | ||| | | ||| || | Sbjct 47308 AGGCTAATGAAAATTGGACTCTCATGTGCCCTGACGAGTGCAGAGGTTTGTATGAAGTCT 47249 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015 || | || ||||| | |||||| || |||||| ||| || | || || Sbjct 47248 GGGGTGATGAATTTGAGGCTCTTTACACCAAGTATGAACAAGCTGGTTTGGGCCGTAAGA 47189 Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 || || || ||| | | ||||| |||| | || ||| |||||||||| || | Sbjct 47188 CCATCCCCGCACAAAAGTTATGGTTTGCAATCTTACAAAGTCAAATTGAAACTGGTACGC 47129 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGC-AAATCTAATCAAATGAATTTAGGAACA 111134 | ||||| | || || ||| | | ||| |||||||| |||| |||| | || || Sbjct 47128 CGTATATGCTTTACAAGGAT-GCCTGCAACGCAAAATCTAACCAAAAGAATCTGGGTACC 47070 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG---TTGTAC 111165 || || ||| || |||||||||| |||||| Sbjct 47069 ATAAAATCTTCCAACTTGTGCTGTGAAATTGTAC 47036 >seq3 Length=2150608 Score = 100 bits (110), Expect = 7e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || || |||||||| || || |||| |||| ||| ||||| |||| || Sbjct 1199151 GTTATATTTAACAGGCAACCTTCTCTACATAGAATGAGTATTATGGCACATAGGGTTC-- 1199094 Query 305390 GTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 || |||| | || | || ||| |||| |||| | ||| |||| |||||||||||| | Sbjct 1199093 GTGTTATGCCAGGTTCTACGTTTAGATTTAATGAATGTGTTTGTCAGCCTTATAATGCAG 1199034 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAAT 305507 | |||||||| || |||||||||||||| | || ||| || | | ||| | |||||| Sbjct 1199033 ACTTTGATGGTGACGAAATGAATATGCACCTTCCACAAACATATGAAGCAAGGGCTGAAT 1198974 Query 305508 TAT 305510 || Sbjct 1198973 CAT 1198971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812663145649