Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 136 3e-27 >seq2 Length=1844256 Score = 136 bits (150), Expect = 3e-27 Identities = 174/236 (74%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| | | ||||| || ||||||||||| ||||| |||||||| || || Sbjct 534843 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGA 534784 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| |||| |||||| ||||| |||||||| | ||| || ||| | || Sbjct 534783 GAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGG 534724 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || || | |||| || | |||||||| | || | Sbjct 534723 GATACCCTCCTTGTCTTGAATCTT-TGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGA 534665 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 | |||| ||||| || || || || | || |||||||| || |||||| ||||| Sbjct 534664 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATA-TTGGT 534610 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| | | ||||| || ||||| ||||| ||||| ||||||||||| || Sbjct 535071 ACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGA 535012 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| ||| |||| |||| ||| || || ||||||||||||||||||||||| | || Sbjct 535011 CAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGG 534952 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || || | |||| || | ||||| || | ||| | Sbjct 534951 AATGCCCTCCTTGTCTTGAATCTT-TGCCTTGACATTCTCAATTGTGTCACTAGGTTCAA 534893 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || | || |||||||| || |||||| Sbjct 534892 CTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATA 534843 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| | | ||||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 1772206 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGA 1772147 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| ||| || || ||||||||||| | |||||| ||| | || Sbjct 1772146 GAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 1772087 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||| || | | |||| || | |||||||| | || | Sbjct 1772086 AATGCCCTCTTTGTCCTGAATCTT-GGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGA 1772028 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || |||||||| || ||||| Sbjct 1772027 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 1771979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703963945280