Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq4 89.7 5e-13 >seq3 Length=2150608 Score = 109 bits (120), Expect = 5e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| ||| Sbjct 1564108 GCGGGCATGGTCTAGTGGTTATGACGTCTGCTTTACACGCAGAAGGTCCCGAGTTCGATC 1564167 Query 39838 CCCGGTGCCCGTATTTCTGA 39857 | |||||||||||| | ||| Sbjct 1564168 CTCGGTGCCCGTATGTTTGA 1564187 >seq4 Length=637648 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 39776 AGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAA 39835 ||||||| |||||||||||||||| || ||| || |||||||| |||||||| |||| | Sbjct 73945 AGGCGGGCGTGGTCTAGTGGTTATGACGCCTGCTTCACACGCAGGAGGTCCCGAGTTCGA 73886 Query 39836 TCCCCGGTGCCCGTATTTCTGA 39857 ||| ||| |||||||| | ||| Sbjct 73885 TCCTCGGCGCCCGTATGTTTGA 73864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466124747560960