Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 266 4e-66 >seq5 Length=831028 Score = 266 bits (294), Expect = 4e-66 Identities = 1192/1858 (64%), Gaps = 93/1858 (5%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||| ||| |||||||| |||| ||| ||||| || || ||||||| || || Sbjct 46099 GCTGGTTGTGTGCGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAG 46158 Query 68455 TGCATACTTGTTAGTTTG--GAATAACTTGGATCGGCTATATGAATATTCATCGATTGAC 68512 ||||||||||| |||||| |||| |||| | | || | |||||| | || || Sbjct 46159 TGCATACTTGTCAGTTTGCTGAATG--TTGGTTGTTCCATGTAAATATTGAGGGACTGCG 46216 Query 68513 TTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTT 68572 ||||| || || ||||||||| || ||||| | ||| || ||||||| ||||| Sbjct 46217 ACTGATCTATAAAGATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTT 46276 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTATTTTGAATGGATC 68632 |||||| || || | | | || || | ||| || | | || ||| || Sbjct 46277 CCCAAACTGTTTTGTACAATTCCTTTATGTG---TGGTGGGATT-TCTTCAATATGTCTC 46332 Query 68633 CA----CCATCGGATATAATTATATT---CTTGATCTCATCATTCCACAATTTTCTCTCC 68685 | || | | || ||| | || ||| || || ||||| | | || Sbjct 46333 AAAGAGCCGTTGTATGCAATAAGCTTTTGCTTCATAGTCTCGTTCCAGAGTCCAAGATCG 46392 Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 || | | || | ||| |||||||| | ||||| || || || ||| Sbjct 46393 ACCAAGTCATTGAGCAAATGTGGATTAACAACAAAGAATTCACCGCTCAATAC---ACGT 46449 Query 68746 GTGTAA---ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 ||||| || ||||| |||||||| || | ||||||||||||||||| ||| |||| Sbjct 46450 CTGTAATAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAG 46509 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT 68862 || || ||||| |||||||| |||| |||||| ||||| | ||||||| || | ||| Sbjct 46510 GTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATT 46569 Query 68863 TTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTA-CAACATT------CCAAAG 68915 | | || || | ||| |||||||| | || || ||||| | |||||| Sbjct 46570 CTTGCCTTAAGGGCATCCCAGTCCCAAAGCT----TGTTATCAACAGTAGCACCCCAAAG 46625 Query 68916 ATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTC 68975 |||| | || | || || | | ||| || || ||||| |||||| | || | Sbjct 46626 ATCGAACTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATA 46685 Query 68976 CTGTTCAGCTAGTTCACAACTTGCCTCTA--ATGCAC-CGTAATAAATTGTTTCGAAAAT 69032 || ||| || | | | | | ||| | ||| | |||||||| ||||| || || Sbjct 46686 CTTTTCGGCCAA---AGAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATAT 46742 Query 69033 CTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGC 69092 ||| || || || ||||| | || |||||||| | || | || || | Sbjct 46743 ACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGT 46802 Query 69093 ATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGC 69152 ||| || || || ||||| |||| ||| ||||| || || | ||||||| ||| Sbjct 46803 ATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGC 46862 Query 69153 TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTC--GGACTACTACT 69210 ||| | || || || || |||| || |||| || | ||| | | | || Sbjct 46863 TTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGACACG 46922 Query 69211 TTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATC--TAT-AACAAACATA 69264 | | | | | || || |||||||| || || | || ||| |||||||||| Sbjct 46923 TGAG--ATCTTGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATA 46980 Query 69265 TTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATT 69324 | || | || || | ||||| || || || || || || | ||| |||| Sbjct 46981 GGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACA 47040 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || || | || | |||| || || |||||||| | || ||| ||| | Sbjct 47041 ATTTCACAGCACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCG 47100 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||||| ||||||||||| ||| |||| |||||||||||||| ||| || | | Sbjct 47101 TTGCAGGCATCCTTGTAAAGCATATACGGCGTACCAGTTTCAATTTGACTTTGTA----A 47156 Query 69445 GATTTCCAAACGACCCTAGCATTTATT-----ACGGTCTTGTAACGCTTCT------CTT 69493 |||| | || || || | ||| | | |||||| ||| | ||| Sbjct 47157 GATTGCAAA----CCATAACTTTTGTGCGGGGATGGTCTT---ACGGCCCAAACCAGCTT 47209 Query 69494 TTTCATATT--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 |||||| | ||||| | |||| || |||||||| ||||| || |||| ||| || Sbjct 47210 GTTCATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCAGACTTCATACAAACCTCT 47267 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 || || | || ||||| | | ||| |||| | ||| ||| ||||||||||| | Sbjct 47268 GCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAA 47327 Query 69612 ATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCT---ATTTTCTTCATTTCCTG 69667 ||| || ||||| || || ||| ||||||||||| | ||| || ||| || | || Sbjct 47328 ATCAGGGATCCATAGCGC-ATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCAC--CGTG 47384 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 ||||| ||||| | | || | ||||| | ||||||||| || | |||||| | Sbjct 47385 G-TTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGG 47443 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | ||| || |||| || |||||||| | || |||| || | ||| ||| Sbjct 47444 CAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGA 47503 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 | || ||| |||| |||||||||||| | |||||||| || |||||| || | Sbjct 47504 TACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACCCCGAATATATGAACCAC 47563 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || || || ||| | || |||||||| || || ||| ||| | |||| Sbjct 47564 TCGCACGTATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGATTTGCTGATGAAGGCAC 47623 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | | ||| ||| | | || || | | ||||||| ||| | | | ||||| Sbjct 47624 ACTGCGTCAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTGCATATCCAACAAAAAAC 47683 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 || ||||||||| | | | ||||| |||||||||| || |||| ||||| || | Sbjct 47684 AGGAAGACATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGTTGGAGTAGCGTGTGTAA 47743 Query 70028 ACCATTTT----TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTG 70082 | | ||| ||| ||| | ||||||||||| | ||| | ||| |||| | Sbjct 47744 AAAACTTTTGGCTCATTAAG----TGGTATGTTTCAACTGTACGTTCGACATCACCACAG 47799 Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 || ||||| | ||||||||| ||||| || ||||| ||||| || | || || || Sbjct 47800 -TGGATTCCCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTCCACGATCTTGTTGTT 47858 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAA 70199 | ||||| || || ||||| |||||||| ||||| || | ||| |||||| Sbjct 47859 GGTACGCAACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTAATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908722722760