Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 1e-12 >seq3 Length=2150608 Score = 89.7 bits (98), Expect = 1e-12 Identities = 170/246 (69%), Gaps = 12/246 (5%) Strand=Plus/Plus Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48533 ||||| ||| |||||||||||||||| || |||||| | | | ||| | || ||| || Sbjct 715379 GCTGGGACACAATACCGTGGTGAATTTGAGGAACGTCTCAAGGCGATTTTGAAGGAAGTT 715438 Query 48534 AAA------AAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGT 48587 || || |||||| ||||| |||| ||||||||| | || | | | | ||| Sbjct 715439 CAAGATGCTCAAGGAGAAATTGTAA---TGTTTATTGATGAAATCCACACTGTTGTTGGT 715495 Query 48588 GCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCA 48647 ||||||| | || || || || | || | | ||||| | |||||| ||| || Sbjct 715496 GCTGGTGAT-GC-TCA-AGGTGCTTTAGACGCGGGAAATATGCTAAAACCTTTACTGGCA 715552 Query 48648 CGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAA 48707 | || || | ||| ||| ||||| ||||||| ||||||| ||||||| || ||| Sbjct 715553 AGAGGGGAATTGCGTTGTATTGGTGCGACAACTTTACAGGAATACCGCCAGAGAATAGAA 715612 Query 48708 AAAGAT 48713 || ||| Sbjct 715613 AAGGAT 715618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108995072118991