Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=831028 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468 |||| ||||||| ||||||| ||||| || | ||||| | |||||||| |||||| Sbjct 46072 TCGATTGTGAATTTTATGGCATCAGTGGCTGGTTGTGTGCGTAGATAATACACACCTGTT 46131 Query 130469 TTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGT-AAT-TGGGTT 130526 |||||||| |||| ||||||| ||| || || || ||||| | ||| | |||| Sbjct 46132 TTGAGTCCCTTTTTCCATCCATAAAAGTGCATACTTGTCA--GTTTGCTGAATGTTGGTT 46189 Query 130527 GCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCA 130586 | ||| | | || ||||| || ||||| ||||| ||||| || || || ||||||| Sbjct 46190 GTTCCATGTAAATATTGAGGGACTGCGACTGATCTATAAAGATTCCTCTATCCGCAGCCA 46249 Query 130587 TGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 | || | || || || | || || |||||| | || ||||| | ||| | |||||| Sbjct 46250 TATCTATGATTGTCTTTTGCTTAATTTCCCAAACTGTTTTGTACAATTCCTTTATGTGT 46308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934353390008