Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 255 7e-63 >seq5 Length=831028 Score = 255 bits (282), Expect = 7e-63 Identities = 731/1112 (66%), Gaps = 34/1112 (3%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 |||||||| | || ||||| || || |||||||||| ||||| || || | ||| ||| Sbjct 46456 TAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAGAG 46515 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || |||| || | | ||| | | ||| | | || || | | || Sbjct 46516 GCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTGCC 46575 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT------CCCACATGTCAAAC 110881 || || |||||||||| | |||||| | ||| | |||| | || ||| Sbjct 46576 TTAAGGGCATCCCAGTCCCAA---AGCTTGTTATCAACAGTAGCACCCCAAAGATCGAAC 46632 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || | | ||||| || || || ||||| | | | ||||| ||| | ||| Sbjct 46633 TGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTCG 46692 Query 110942 GCCAATTCACAGCTCGCCTC---CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 ||||| | || | | ||| ||| | || | ||| || |||||||| ||||| Sbjct 46693 GCCAA---AGAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTTG 46749 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| |||| |||||||||| || ||||||| ||||| |||| || || ||| || Sbjct 46750 TTCAGCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTATCAGCT 46809 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 | ||||||||| || | ||||||||| ||||| || | ||| || | | || || Sbjct 46810 AAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTC 46869 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || | ||||| ||||||| | |||| | ||| | |||| | || ||| Sbjct 46870 ACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGACACGTGAGATC 46929 Query 111179 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 111238 | | ||| || | |||||||||| ||| | ||| ||| || | || | ||| Sbjct 46930 TTGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCG 46989 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 ||||| ||||| || || ||||| || | |||| || |||| || |||||| Sbjct 46990 ATTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAG 47049 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || ||||||||| || || || |||| ||||||||||||| || |||||| ||| Sbjct 47050 CACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCA 47109 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA- 111417 |||||||| ||||| || ||||| || || || | || || | || || ||| Sbjct 47110 TCCTTGTAAAGCATATACGGCGTACCAGTTTCAATTTGACTTTGTAAGATTGCAAACCAT 47169 Query 111418 AACATCGGCGGCTGGTACAATGGCGTT--GGCCC-GTCCCTCCGCCTCGTACTTTGTGTA 111474 ||| | | || || |||| || ||||| || | || ||||| ||||| Sbjct 47170 AACTTTTG-TGCGGG---GATGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTA 47225 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAGA 111533 || || ||||| || |||||| | || | | |||| ||| || ||| || || | Sbjct 47226 AAGAGCCTCAAATTCATCACCCCAGACTTCATACAAACCT-CTGCACTCGTCAGGGCACA 47284 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 |||| ||| | || ||||||| || ||||| || | || || ||||| || | Sbjct 47285 TGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCG 47344 Query 111594 ATGAAAAGAGATCTCT---ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | ||||||||||| | | | ||||| |||| ||||| || | || | Sbjct 47345 CATAGAAGAGATCTCTTGCTCTCAAATCCTCT---GCACCGTGGTTTTTGCGCAGATCCA 47401 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC--- 111707 | || | |||||||| ||||||||||| | ||| | || | || ||| ||| Sbjct 47402 ACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTT 47461 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 || || | |||| ||||| || || | |||||| | || | |||||||| || Sbjct 47462 TACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAA 47521 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATA 111799 |||||| || || |||||||| ||||||||| Sbjct 47522 TACCATTAGACTGTCCATTTGTACCCCGAATA 47553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031929346400