Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 190 3e-43 >seq5 Length=831028 Score = 190 bits (210), Expect = 3e-43 Identities = 722/1121 (64%), Gaps = 34/1121 (3%) Strand=Plus/Plus Query 118173 CGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGG 118232 ||||| |||||| || | || |||||||| || | ||||| || ||||| || || Sbjct 46447 CGTCTGTAATAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGA 46506 Query 118233 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTA 118292 | || ||||| || ||||| || |||| || | ||| | | ||| | || | Sbjct 46507 GAGGTAGAGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTC 46566 Query 118293 ATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTC--------CCCCTGCC 118344 || | | |||| || || |||||||| | ||||| | || | || || Sbjct 46567 ATTCTTGCCTTAAGGGCATCCCAGTCCCAA---AGCTTGTTATCAACAGTAGCACC--CC 46621 Query 118345 ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGC 118404 | | ||| ||||| | | |||||| || || ||||| || | ||| ||||| | | Sbjct 46622 AAAGATCGAACTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGAC 46681 Query 118405 CCTCAACCTCCGCCAATTCGGAGCTCGCCTCG---AGGGCTGCGTGATACATTGTTTCAA 118461 | | || ||||| ||| | | ||| || || | ||| || ||||||| Sbjct 46682 CATACTTTTCGGCCAAA---GAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAA 46738 Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAA 118521 | || || |||| || |||| || || || ||||| | || |||| || | Sbjct 46739 ATATACGCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGA 46798 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | ||| || | |||||| || || | ||||| || | || | | ||| || | || Sbjct 46799 ACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACC 46858 Query 118582 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 118641 ||| || ||| || || | || ||||| || | || | ||| | || | | Sbjct 46859 TAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGA 46918 Query 118642 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 118701 | || ||| | | |||||| | | |||||||| | ||| | ||| ||| || Sbjct 46919 CACGTGAGATCTTGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACA 46978 Query 118702 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 118761 |||| | |||||||| |||| ||||| |||| || | ||||||| |||| || Sbjct 46979 TAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTA 47038 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 |||||| ||||||||| ||| || ||||| |||| |||||||| || || |||| Sbjct 47039 CAATTTCACAGCACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTG 47098 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT--GAG 118879 ||| || ||||||||||||||||| || ||||| || || || ||| ||||| | Sbjct 47099 CGTTGCAGGCATCCTTGTAAAGCATATACGGCGTACCAGTTTCAATTT--GACTTTGTAA 47156 Query 118880 AATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTT--GGCTC-GCCCCTCTTCCTC 118936 || || ||| | | || || | ||| || ||| | || ||| || Sbjct 47157 GATTGCAAACCATAACTTTTGTGCGGGGA---TGGTCTTACGGCCCAAACCAGCTTGTTC 47213 Query 118937 GTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC-CT 118995 ||||| ||||| || || ||||| || |||||| | | || | | ||| ||| || Sbjct 47214 ATACTTGGTGTAAAGAGCCTCAAATTCATCACCCCAGACTTCATACAAACCT-CTGCACT 47272 Query 118996 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 119055 || ||||| | ||||| ||| | || ||||||| || ||||| || | || | Sbjct 47273 CGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAG 47332 Query 119056 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 119115 ||||||| ||||| |||||||||| | | || || | || || || | Sbjct 47333 GGATCCATAGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGC 47392 Query 119116 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC 119174 ||| ||||| | | | |||||||| ||||| || |||| || | || | | || Sbjct 47393 GCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAAC 47452 Query 119175 CCCT--TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 |||| | || ||| |||| | |||||| | || || | |||||| | ||| | || Sbjct 47453 CCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACA 47512 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 |||||| ||||||| || || |||||||| ||||||||| Sbjct 47513 TTGGAACAATACCATTAGACTGTCCATTTGTACCCCGAATA 47553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435130426040