Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 239 5e-58 >seq5 Length=831028 Score = 239 bits (264), Expect = 5e-58 Identities = 940/1465 (64%), Gaps = 50/1465 (3%) Strand=Plus/Minus Query 104506 TATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGC 104565 ||||||||| |||||||| || || |||||||| |||||||| | || | |||||| | Sbjct 47553 TATTCGGGGTACAAATGGACAGTCTAATGGTATTGTTCCAATGTTGCGTATCTTTAACAC 47494 Query 104566 CACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCT 104622 || || ||||| |||| | || || ||| ||| || | || | ||| | Sbjct 47493 AACCGCCAAGTATGTTGATCAGGGGGGTGGTAAAAGAAGGGGTTCGTTTGCCATATATTT 47434 Query 104623 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGA 104682 ||||||||||| |||||||| | || | | || |||| ||||| |||| || Sbjct 47433 GGAGCCATGGCATGCGGATATATTTAAGATGTTGGATCTGCGCAAAAACCACGGTGCAGA 47374 Query 104683 GGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAG 104742 ||| | | | |||||||||| || || ||||| || ||| | || ||||| | Sbjct 47373 GGATTTGAGAGCAAGAGATCTCTTCTATGCGCTATGGATCCCTGATTTGTTTATGAAACG 47314 Query 104743 AGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCG 104801 ||||||| | || |||||| ||||| | || || ||| || ||| ||| | | | Sbjct 47313 CGTTGAGGCTAATGAAAATTGGACTCTCATGTGCCCTGACGAGTGCA-GAGGTTTGTATG 47255 Query 104802 ATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 | | | |||||| || ||||| || |||||||| ||||| || ||| ||| || Sbjct 47254 AAGTCTGGGGTGATGAATTTGAGGCTCTTTACACCAAGTATGAACAAGCTGGTTTGGGCC 47195 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | || || | | ||| || || | | ||||| || |||| Sbjct 47194 GTAAGACCATCCCCGCACAAAAGTTATGGTTTGCAATCTTACAAAGTCAAATTGAAACTG 47135 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 |||| || || ||||||||||| || ||||| ||| ||| ||| ||||||||| ||| Sbjct 47134 GTACGCCGTATATGCTTTACAAGGATGCCTGCAACGCAAAATCTAACCAAAAGAATCTGG 47075 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGA---CAAAGATG 105038 || || || |||||| | || ||||| | | | ||| || |||||| | Sbjct 47074 GTACCATAAAATCTTCCAACTTGTGCTGTGAAATTGTACAGTATACTGATAGCAAAGAAG 47015 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 ||||| |||||| | || ||||||||| | || | || ||| || ||| | Sbjct 47014 ---TTGCTGTCTGTAACTTGGCTTCAATCGCTTTACCTATGTTTGTTAATAAGGAGGAGA 46958 Query 105099 AGACATTTGATT--ATGAAAAACTCCACGAAGTTACGAAAACTGTC---ACCAAAAACCT 105153 |||| ||||||| | ||| | || || | ||| |||| || | || | Sbjct 46957 AGACTTTTGATTTCAAGAAGCTTTACAAGATCTCACG-----TGTCATTACATACAATTT 46903 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 ||| | | ||||||||||| | ||||| || || ||| | | || ||| | | Sbjct 46902 GAACCAAATCATTGATAGAAACTACTACCCAGTGAAGGAAGCTAGGTATTCAAATTTCCG 46843 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 ||| | || |||||| | || ||||| ||| | || ||| ||||| | | ||| | Sbjct 46842 TCACAGGCCTATTGGTGTTGGAGTTCAAGGTTTAGCTGATACGTTCATGTTGTTGCGCTA 46783 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 ||||||| || || ||||| | ||| | || ||| |||||||| || || ||| | Sbjct 46782 TCCATTTGAATCTGATGAAGCCAGGGAGCTGAACAAGCGTATATTTGAAACTATTTATTA 46723 Query 105334 CGCCGCTCT---TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 || ||| |||| | | || ||||| || |||||| ||||| | | Sbjct 46722 TGCGTGTCTGGATGAGTCTATCTC---TTTGGCCGAAAAGTATGGTCATTATGACTCATA 46666 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG------AAGGTGA 105444 | ||||| || ||||| ||||| | | || || ||| | |||| | ||| Sbjct 46665 TCCAGGTTCGCCTGCTTCTCAAGGTCTTTTGCAGTTCGATCTTTGGGGTGCTACTGTTGA 46606 Query 105445 GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | ||||||| | |||||||| || || |||| | | || || | | ||| | | Sbjct 46605 TAACAAGCTT---TGGGACTGGGATGCCCTTAAGGCAAGAATGAAAAAACATGGTTTGAG 46549 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| | | || ||||||| ||||| || ||||| ||| | || || ||||| ||||| Sbjct 46548 AAACTCTTTATTCTTGGCTCCTATGCCTACTGCCTCTACCTCTCAGATTTTGGGAAATAA 46489 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 105624 ||||| || || || || || | ||||||||| ||| | | || || || Sbjct 46488 TGAATCTTTCGAGCCATATACTAGTAACATCTATTACAGACGTGTATTGAGCGGTGAATT 46429 Query 105625 TGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684 | |||| || ||| | | ||||| | || |||| |||||| | || Sbjct 46428 CTTTGTTGTTAATCCACATTTGCTCAATGACTTGGTCGATCTTGGACTCTGGAACGAGAC 46369 Query 105685 TATGAAG---GATCTCA-TGGTGAAAGCGGGTGGTTCCATTCA-AAATATTGTGGATATT 105739 ||||||| | || | || | | ||| | | || | | |||||| || || Sbjct 46368 TATGAAGCAAAAGCTTATTGCATACAACGGCT-----CTTTGAGACATATTGAAGAAATC 46314 Query 105740 CCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATT 105799 ||| | || ||| | |||||| |||||||||||||| ||| ||| |||| Sbjct 46313 CCACCACACATAAAGGAATTGTACAAAACAGTTTGGGAAATTAAGCAAAAGACAATCATA 46254 Query 105800 GACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCA 105857 || ||||| || ||| | || ||| || |||| |||| ||| | ||| | | || Sbjct 46253 GATATGGCTGCGGATAGAGGAATCTTTATAGATC--AGTCGCAGTCCCTCAATATTTACA 46196 Query 105858 TGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTC 105917 ||||| ||||| | ||| || | ||||||| | || | ||||| ||||| | Sbjct 46195 TGGAACAACCAACATTCAGCAAACTGACAAGTATGCACTTTTATGGATGGAAAAAGGGAC 46136 Query 105918 TCAAAACGGGGATGTATTACCTCCG 105942 ||||||| || ||||||| || || Sbjct 46135 TCAAAACAGGTGTGTATTATCTACG 46111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260734383160