Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 seq5 123 3e-23 >seq2 Length=1844256 Score = 178 bits (196), Expect = 1e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || |||||||| || || |||||||| ||| | | Sbjct 1771979 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 1772038 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 1772039 GACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 1772098 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | |||||||||||||||||||| ||||| | |||||| || | || ||||| Sbjct 1772099 CAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTATAAC 1772158 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||| |||||||| Sbjct 1772159 ATTCAAAAGGAGAGTACTCTTCA 1772181 Score = 165 bits (182), Expect = 9e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || |||||||| ||||||||||| ||||| | || Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || ||||| ||||||||||| ||||| || || ||| Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAG 534963 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | |||||||||||||||||||| ||||| | ||||| | | || || || Sbjct 534964 CAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAAC 535023 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAG-TCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||||||| | | |||| || | |||||||| Sbjct 535024 ATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGT-TGCGCGGTGG 535070 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || |||||||| || || |||||||| ||| | | Sbjct 534616 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 534675 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 534676 GACACGATTGAGAATGTCAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAA 534735 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| || || || ||||| ||||| | ||| || || ||||||| || Sbjct 534736 CAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTACAAC 534795 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||| ||||||||| Sbjct 534796 ATTCAAAAGGAGAGCACTCTTCA 534818 >seq5 Length=831028 Score = 123 bits (136), Expect = 3e-23 Identities = 485/755 (64%), Gaps = 21/755 (3%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || |||| || || || || || |||| ||| ||| ||| || ||||| |||| Sbjct 46993 GAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGCAC 47052 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || ||||| || || |||||||| || || ||||| || || |||||||| || ||| Sbjct 47053 AAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCATCC 47112 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG--AGGATGGCGTCCCAAA 81085 ||||| ||| ||||| ||||| || || | | |||||| | ||| || ||| | Sbjct 47113 TTGTAAAGCATATACGGCGTACCAGTTTCAA--TTTGACTTTGTAAGATTGCAAACCATA 47170 Query 81086 TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTT 81145 || | || || ||| ||| || | ||||||||| |||| Sbjct 47171 ACTTTTGTGCGGGGATGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGTGTAAAGAG 47230 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || || | |||| | |||| | || |||||||| ||||||||| || Sbjct 47231 CCTCAAATTCATCACCCCAGACTTCATACAAACCTCTGCACTCGTCAGGGCACATGAGAG 47290 Query 81206 GCCAGTCGGTGTCGTT---CTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 ||| | | || || ||| || ||||| || ||||||||||| || || Sbjct 47291 TCCAAT---TTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCATAGCGCAT 47347 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| || || | | | ||||| |||| ||||| ||||| || | | | Sbjct 47348 AGAAGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTGCGCAGATCCAACATCT 47407 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-ACCCCT--TGCGACGGC 81379 | || ||||||||||||||||||| ||| | ||| | || |||||| | || | Sbjct 47408 TAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCCTTCTTTTACCAC 47467 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | ||||| | || || ||| || | |||||| | ||||||||| || | ||||||| Sbjct 47468 CCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTGGAACAATACCAT 47527 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAA 81499 ||||| || || |||||| ||| || || | || || | ||| |||| || Sbjct 47528 TAGACTGTCCATTTGTACCCCGAATATATGAACCACTCGCACGTATTTTGTGAATTGCAA 47587 Query 81500 GACCGATGCCACCTGACCACTT--TGAAATCTGA--GCACACCGGTTCATGGTCTCATAA 81555 | || || ||||| | | || ||| ||| |||||| | ||| || | || Sbjct 47588 GGCCTATTCCACCAGCTGATTTGCTGA----TGAAGGCACACTGCGTCAGTGTATTGAAA 47643 Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 ||||| | | ||| | || ||| || | ||| |||||| ||||| || |||| Sbjct 47644 ATTCCTGCAAGAGAATCATCTTGCATATCCAACAAAAAACAGGAAGACATTTGTGGGCGA 47703 Query 81616 TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 || | || ||||| || || ||||| || ||||| Sbjct 47704 TTGGTTCCTGCATTAAATAGCGTTGGAGTAGCGTG 47738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310335840080