Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 127 1e-24 >seq2 Length=1844256 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||||||||||||||||||||| || ||||| || || || |||| || Sbjct 534824 ACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCC 534765 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| ||||| || || || | ||||||||| || || | |||||||||||| || Sbjct 534764 AGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGTCT-TG 534706 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | |||| || || | ||| ||||| | ||| || || | ||| || || || Sbjct 534705 AATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 534646 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | || || |||||||| ||||| ||| Sbjct 534645 GCCAGTGAGAGTCTTTACAAAAATTTGCATATTG 534612 Score = 123 bits (136), Expect = 2e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| ||||||||||||||||| ||||| || | ||| || |||| || Sbjct 535052 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCGTCCTCC 534993 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| ||||| ||||| || |||||||| || ||||| || | |||||||||||| || Sbjct 534992 AGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCT-TG 534934 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTT 34675 | |||| || || | ||||||||| | | | || ||||| | || || || | Sbjct 534933 AATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGT-TCAACTTCAAGAGTAATGGTCT 534875 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || || |||||||| ||||| Sbjct 534874 TGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| ||||||||||||||||||||||| || || || || |||| || Sbjct 1772187 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCC 1772128 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| ||||| ||||| || || | ||| ||||| || || | ||||| ||||| Sbjct 1772127 AGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGA 1772068 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 ||||| || | | ||||||||| | ||| || || | ||| || || || Sbjct 1772067 ATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTG 1772008 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || | || || |||||||| ||||| ||||| Sbjct 1772007 CCAGTGAGAGTCTTTACAAAAATTTGCATCTTGAT 1771973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729565478097