Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=1844256 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 534613 AATATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 534672 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||||| | ||| ||||| ||| || ||||| || ||| | || | Sbjct 534673 AGCGACACGATTGAGAAT--GTCAAGGCAAAGATTCAAGACAAGGAGGGTATCCCTCCAG 534730 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || |||| ||||| ||||| |||||| |||| |||| |||| | || || | Sbjct 534731 ACCAACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACT 534790 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||||||||| | || |||||| | | |||||||| || Sbjct 534791 ACAACATTCAAAAGGAGAGCACTCTTCACTTGGTTCTTAGGTTGCGTGGTGG 534842 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||||| ||||| || ||||| |||| || ||| | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||| || ||||| || || |||| ||| | Sbjct 534904 GACACAATTGAGAAT--GTCAAGGCAAAGATTCAAGACAAGGAGGGCATTCCCCCGGATC 534961 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || |||||||| || || ||| |||| |||| ||| | ||||| ||||||| Sbjct 534962 AGCAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACA 535021 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||||| ||| | || |||||| | | ||||| || || Sbjct 535022 ACATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGCGGTGG 535070 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 1771976 AAGATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 1772035 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || || || | ||| ||||| || || |||||||| || |||| | Sbjct 1772036 AGCGACACAATTGAAAAT--GTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAG 1772093 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| |||| |||||||| || || ||| |||| |||| || | | || |||| Sbjct 1772094 ACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATT 1772153 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| ||||| ||||| ||| | || |||||| | | |||||||| || Sbjct 1772154 ATAACATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGTGGTGG 1772205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862360966343