Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq1 91.5 3e-13 >seq2 Length=1844256 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||||||||| ||| ||||| ||||||||||||| || || | || Sbjct 1772193 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCG 1772134 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || ||||| ||||| || || || || | | || ||||| ||||||| || || ||| Sbjct 1772133 TCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTG 1772074 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||| ||||| || || ||||| || ||||| | || ||||| || ||||| Sbjct 1772073 TCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATG 1772014 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||||||||||||||| | ||||| || Sbjct 1772013 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | |||||||||| ||| ||||| ||||| || || | || || | || Sbjct 534830 CTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCG 534771 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || ||||| || ||||| ||||| || | | |||||||| ||||| | || |||||| Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||| || || || || || ||||| | || ||||| || ||||| Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||||||||||||||| | ||||| || Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || || | ||||||||| ||| ||||| ||||| ||||| | | || | ||| Sbjct 535058 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCG 534999 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || ||||| ||||| || || || || | || || || || || |||| || |||||| Sbjct 534998 TCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTG 534939 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || |||||| || || || || || |||||| |||||| || ||||| || Sbjct 534938 TCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATG 534879 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||||||||||||||| | ||||| Sbjct 534878 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 >seq1 Length=3278253 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||||||||| || || || || || |||||||| ||||||| | || || | Sbjct 1651077 CTTCCAAAGAAGCATGGTAGGGGTGGTCAGTCTGCTCTCCGTTTTGCGCGTCTGAGACTG 1651018 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 |||||| | ||||| ||| | ||||||||||| ||||| ||| | | ||||| | | Sbjct 1651017 GAAAAGCGCCACAATTACATAAGAAAAGTTGCCGAGAATGCAGTTCTCATGTTTATTACA 1650958 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || | || |||| | ||| | ||||||| ||| ||||| ||||||| Sbjct 1650957 AACGATAAACCCAATGTTACGGGTCTGATTTTGGCTGGTAATGCAGATTTCAAGA 1650903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151866335285