Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 >seq2 Length=1844256 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || || || ||||| || || || ||||| || || || || || Sbjct 534613 AATATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 534672 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || |||| | || ||||| || ||| | || ||||| Sbjct 534673 AGCGACACGATTGAGAATGTCAAGGCAAAGA-TTCAAGACAAGGAGGGTATCCCTCCAGA 534731 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| | || || || ||||||||||||||||| |||| |||||| | || || Sbjct 534732 CCAACAGAGGTTGATTTTCGCCGGCAAACAACTGGAGGACGGTCGCACTCTCTCAGACTA 534791 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| ||| ||| | || || ||| | |||||||| || || Sbjct 534792 CAACATTCAAAAGGAGAGCACTCTTCACTTGGTTCTTAGGTTGCGTGGTGG 534842 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| || || || || ||||| |||||||| | | Sbjct 534844 ATGCAAATTTTTGTAAAGACTCTCACTGGCAAGACCATTACTCTTGAAGTTGAACCTAGT 534903 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || ||||| || || | || || ||||| Sbjct 534904 GACACAATTGAGAATGTCAAGGCAAAGA-TTCAAGACAAGGAGGGCATTCCCCCGGATCA 534962 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| || || |||||||| |||| ||| || || |||||||| Sbjct 534963 GCAGCGTTTGATTTTTGCTGGTAAGCAACTGGAGGACGGACGTACATTGTCTGATTACAA 535022 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||| || | || || ||| | |||||||| || || Sbjct 535023 CATTCAAAAGGAGAGTACTCTTCACTTGGTTCTTAGGTTGCGCGGTGG 535070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009562924572