Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 8e-15 seq2 96.9 8e-15 seq4 87.8 4e-12 >seq9 Length=34474 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 7734 GTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATC 7793 ||||||||||||||| | | | ||| |||||| |||| ||| | ||| | || | Sbjct 16564 GTTGGTAAGATTCTTCGGGGTTCATCGAATTAAGTAACATGACCCATCACTTGGATAAGC 16623 Query 7794 TTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-AC 7852 | ||||||||| |||| | ||| | |||||| |||| |||||||| ||||||||| || Sbjct 16624 TCCCGTCAGTTCCTTTAAATTTCATTCTTGCGAACGTACTACTCAGGCGGAATATTTAAC 16683 Query 7853 GCGTTAGCTT 7862 |||||||||| Sbjct 16684 GCGTTAGCTT 16693 >seq2 Length=1844256 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| |||||| || ||||| | ||||| || | | ||| | || Sbjct 534830 CTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCG 534771 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || || || || || ||||| || | | |||||||| || || ||||| |||||| Sbjct 534770 TCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTG 534711 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| |||||| ||| ||| || || ||||| || || || || | ||||| Sbjct 534710 TCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATG 534651 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| || | ||| |||| || | |||||| || Sbjct 534650 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || | ||| ||||| || ||||| | |||||||| | ||| || | || Sbjct 535058 CTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAGACAATGTACGTCCG 534999 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || || ||||| ||||| || || | || || || || || ||||| || |||||| Sbjct 534998 TCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATGCCCTCCTTG 534939 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| |||||| ||| ||| || || ||||| | ||| || || | || || Sbjct 534938 TCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAACTTCAAGAGTAATG 534879 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || | ||| |||| || | |||||| Sbjct 534878 GTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 >seq4 Length=637648 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| ||||||||||| || || ||||| || || |||||||| Sbjct 545599 GAAGATTTGCCCATCAGTAATGGAGATAACATTGGTTGGAATATAGGCTGAGACATCACC 545658 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAG 4562 ||||||||||| | || || || || || || Sbjct 545659 AGCTTGTGTTTCAATAATTGGCAAAGCAGTGAG 545691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531062486246