Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 320 2e-82 >seq5 Length=831028 Score = 320 bits (354), Expect = 2e-82 Identities = 1191/1842 (65%), Gaps = 61/1842 (3%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||| ||| |||||||| |||| ||| ||||| || ||| ||||||| || || Sbjct 46099 GCTGGTTGTGTGCGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAG 46158 Query 76863 TGCATGCTTGTCAGTTTG--GAATAACTAGGATCGGCTATATGAATATTCATCGACTGAC 76920 ||||| |||||||||||| |||| | || | | || | |||||| | ||||| Sbjct 46159 TGCATACTTGTCAGTTTGCTGAAT--GTTGGTTGTTCCATGTAAATATTGAGGGACTGCG 46216 Query 76921 TTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTT 76980 ||||| || || ||||||||| || ||||| | ||| || |||||||| ||||| Sbjct 46217 ACTGATCTATAAAGATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTT 46276 Query 76981 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTT---GTATTTTGAATGG 77037 |||||| |||||| | | || || || | ||| | | | ||| | | | Sbjct 46277 CCCAAACTGTTTTGTACAATTCCTTTATGTGTGGTGGGATTTCTTCAATATGTCTCAAAG 46336 Query 77038 AACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 | || | || |||| | | ||| ||| || ||||| | | || | Sbjct 46337 AGCCGTTGTATGCAATAAGCTTTTGCTTCATAGTCTCGTTCCAGAGTCCAAGATCGACCA 46396 Query 77098 AAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGT 77157 | | | || | ||| |||||||| | ||||| || |||||| ||| ||| Sbjct 46397 AGTCATTGAGCAAATGTGGATTAACAACAAAGAATTCACCGCTCAATAC---ACGTCTGT 46453 Query 77158 AA---ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAG 77214 || || ||||| |||||||| || | ||||||||| ||||||||||| |||| |||| Sbjct 46454 AATAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGTAG 46513 Query 77215 AAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT 77274 | ||||| |||||||| |||| |||||| ||||| | ||||||| || | ||| | Sbjct 46514 AGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCTTG 46573 Query 77275 CTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTAC---AACATCCCAAAGATCGTATT 77331 | || || | ||| |||||||| | | || | || ||||||||||| | | Sbjct 46574 CCTTAAGGGCATCCCAGTCCCAAAGCTTGTTATCAACAGTAGCACCCCAAAGATCGAACT 46633 Query 77332 GTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAG 77391 | | || || | | |||| || || ||||| |||||| | || | |||| | Sbjct 46634 GCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACTTTTCGG 46693 Query 77392 CTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 | | | | | |||| | |||||||| ||||| || || ||| || | Sbjct 46694 CCAAAGAGATAGACTCATCCAGACACGCATAATAAATAGTTTCAAATATACGCTTGTTCA 46753 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATC 77511 | || |||||| | ||||| ||||| | || | || || | ||| ||||| | Sbjct 46754 GCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTATCAGCTAAAC 46813 Query 77512 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAG 77571 | |||||||||| ||||||||| || || | ||| ||| ||||||| | | Sbjct 46814 CTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTTCCTTCACTG 46873 Query 77572 GATAATAATTAATGTCTATAATTTTATTGAGATT---TCTAACAACTACTTTAACCACGT 77628 | || || || | || || |||| || | ||| | ||| || || | | | | Sbjct 46874 GGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGAC-ACGTGA--GATCT 46930 Query 77629 CCTTTAGTTTAAGAAAATCAAA--TCTTC-CATC--TA-TAACAAACATGTTCAAAGCTA 77682 | || || |||||||| ||||| | || || |||||||||| ||||| | Sbjct 46931 TGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAGGTAAAGCGA 46990 Query 77683 TAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTAC 77742 | || || | ||||| || || || || || | | ||| |||| || || | Sbjct 46991 TTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAATTTCACAGC 47050 Query 77743 ATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGT 77802 | | || | |||| || || |||||||| | |||||| ||| ||||| | | Sbjct 47051 ACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGTTGCAGGCAT 47110 Query 77803 CCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 |||| ||||| ||| |||| || || |||||||| || || | ||||| | | Sbjct 47111 CCTTGTAAAGCATATACGGCGTACCAGTTTCAATTTGACTTTGTA----AGATTGCAA-- 47164 Query 77863 CGACTCTAGCTTTTAT-CATAGAT--TTGTATCGC-----CTCTCTCTTTCATA--TTGA 77912 || || ||||| | | ||| | || || | || |||||| | | Sbjct 47165 --ACCATAACTTTTGTGCGGGGATGGTCTTACGGCCCAAACCAGCTTGTTCATACTTGGT 47222 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||| | |||| ||||||||||| ||||| || |||| ||| || ||| || | ||| Sbjct 47223 GTAAAGAGCC--TCAAATTCATCACCCCAGACTTCATACAAACCTCTGCACTCGTCAGGG 47280 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| | | ||| | ||| ||| ||| ||||||||||| | |||||| |||||| Sbjct 47281 CACATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCAGGGATCCAT 47340 Query 78033 AGAGCAATAAATAGATCTCGGGTTCT---ATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 || ||| || ||||||| | ||| || ||| || || || || ||| Sbjct 47341 AGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCA---CCGTGGTTTTTGCGCAGA 47397 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCA--TAACTCCAG 78147 || | | || | ||||| | ||||||||| || | |||||| || | ||| || Sbjct 47398 TCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAACCCC-- 47455 Query 78148 GTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTG 78207 || |||| ||| |||||||| | ||| ||||||| | ||| | | | |||||||| Sbjct 47456 TTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAACATTG 47515 Query 78208 GAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATAT 78267 ||| |||||| ||||| ||||||||| || |||||| ||||| || || || | Sbjct 47516 GAACAATACCATTAGACTGTCCATTTGTACCCCGAATATATGAACCACTCGCACGTATTT 47575 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | ||| | | |||||||| || || || || | || || | ||| || Sbjct 47576 TGTGAATTGCAAGGCCTATTCCACCAGCTGATTTGCTGATGAAGGCACACTGCGTCAGTG 47635 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387 ||| | | || || | | | ||||| ||| | | | ||||||| |||||||| Sbjct 47636 TATTGAAAATTCCTGCAAGAGAATCATCTTGCATATCCAACAAAAAACAGGAAGACATTT 47695 Query 78388 GATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG 78447 | | || |||||||||||||||| || |||| || || ||||| | |||| Sbjct 47696 GTGGGCGATTGGTTCCTGCATTAAATAGCGTTGGAGTAGCGTGTGTAAAAAACTTTTGGC 47755 Query 78448 AAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCT 78506 | || | ||||||||||| | ||| | || ||| | || ||||| | | Sbjct 47756 TCATTAAGTGGTATGTTTCAACTGTACGTTCGACATCACCACAG-TGGATTCCCGCGGAG 47814 Query 78507 ACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTAT 78566 |||||||| ||||| || ||||| | ||| || |||| || || | |||||| || Sbjct 47815 ACACGCATTAACATGTGTTGAGGGCGTTCCACGATCTTGTTGTTGGTACGCAACAAATAC 47874 Query 78567 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAA 78607 || |||||| |||||||| ||||| || | ||| |||||| Sbjct 47875 GAGCGTTCCAATGTTTTAAATCCAAAGTAATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668721849760