Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 313 4e-80 >seq5 Length=831028 Score = 313 bits (346), Expect = 4e-80 Identities = 1193/1850 (64%), Gaps = 77/1850 (4%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||| ||| |||||||| |||| ||| ||||| || ||| ||||||| || || Sbjct 46099 GCTGGTTGTGTGCGTAGATAATACACACCTGTTTTGAGTCCCTTTTTCCATCCATAAAAG 46158 Query 75458 TGCATGCTTGTTAGTTTG--GAATAACTCGGATCGGCTATATGAATATTCATCGACTGAC 75515 ||||| ||||| |||||| |||| | || | | || | |||||| | ||||| Sbjct 46159 TGCATACTTGTCAGTTTGCTGAATG--TTGGTTGTTCCATGTAAATATTGAGGGACTGCG 46216 Query 75516 TTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTT 75575 ||||| || || ||||||||| || ||||| | ||| || |||||||| ||||| Sbjct 46217 ACTGATCTATAAAGATTCCTCTATCCGCAGCCATATCTATGATTGTCTTTTGCTTAATTT 46276 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGT-----ATTTTGAAT 75630 |||||| |||||| | | || || || | ||| ||||| | || | | Sbjct 46277 CCCAAACTGTTTTGTACAATTCCTTTATGTGTGGTGG--GATTTCTTCAATATGTCTCAA 46334 Query 75631 GGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGT 75690 || ||| | | |||| | | ||| || || ||||| | | ||| Sbjct 46335 AGAGCCGTTGTATGCAATAAGCTTTTGCTTCATAGTCTCGTTCCAGAGTCCAAGATCGAC 46394 Query 75691 TAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGT 75750 || | | || | ||| |||||||||| ||||| || |||||| | || | Sbjct 46395 CAAGTCATTGAGCAAATGTGGATTAACAACAAAGAATTCACCGCTCAATACACGTC---T 46451 Query 75751 GTAA---ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807 |||| || ||||| |||||||| || | ||||||||| ||||||||||| |||| || Sbjct 46452 GTAATAGATGTTACTAGTATATGGCTCGAAAGATTCATTATTTCCCAAAATCTGAGAGGT 46511 Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867 || ||||| |||||||| |||| |||||| ||||| | ||||||| || | ||| | Sbjct 46512 AGAGGCAGTAGGCATAGGAGCCAAGAATAAAGAGTTTCTCAAACCATGTTTTTTCATTCT 46571 Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTA-CAACAT------CCCAGAGAT 75920 | || || | ||| |||||||| | || || ||||| |||| |||| Sbjct 46572 TGCCTTAAGGGCATCCCAGTCCCAAAGCT----TGTTATCAACAGTAGCACCCCAAAGAT 46627 Query 75921 CGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCT 75980 || | || | || || | |||| || || ||||| || ||| || | || Sbjct 46628 CGAACTGCAAAAGACCTTGAGAAGCAGGCGAACCTGGATATGAGTCATAATGACCATACT 46687 Query 75981 TTTCAGCTAGTTCGCAACTCGCCTCTA---ACGCACCGTAATAAATTGTTTCGAAAATCT 76037 |||| || | | | | | || | ||||| |||||||| ||||| || || Sbjct 46688 TTTCGGCCAAAGAGATAGACTCATCCAGACACGCA---TAATAAATAGTTTCAAATATAC 46744 Query 76038 TCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCAT 76097 ||| || || || |||||| | ||||| ||||| | || | || || | || Sbjct 46745 GCTTGTTCAGCTCCCTGGCTTCATCAGATTCAAATGGATAGCGCAACAACATGAACGTAT 46804 Query 76098 CTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTT 76157 | |||| || |||||||||| ||||||||| || || | ||| ||| ||||| Sbjct 46805 CAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATACCTAGCTT 46864 Query 76158 CTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAACTACTT 76214 | | ||||| || || |||| || |||| || | ||| | | | || || | Sbjct 46865 CCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATGAC-ACGT 46923 Query 76215 TAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCCATCTA--TCACAAACATAT 76268 | | | | || || |||||||| || ||| || | ||||||||| Sbjct 46924 GAG--ATCTTGTAAAGCTTCTTGAAATCAAAAGTCTTCTCCTCCTTATTAACAAACATAG 46981 Query 76269 TAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTA 76328 | ||| || || || | ||||| || || || || || || | ||| |||| | Sbjct 46982 GTAAAGCGATTGAAGCCAAGTTACAGACAGCAACTTCTTTGCTATCAGTATACTGTACAA 47041 Query 76329 TCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGT 76388 | || ||| | || | | || || || || ||||| | |||||| ||| || Sbjct 47042 TTTCACAGCACAAGTTGGAAGATTTTATGGTACCCAGATTCTTTTGGTTAGATTTTGCGT 47101 Query 76389 TACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAG 76448 | || | ||||| ||||| | | |||| || ||||||||||| || || | || Sbjct 47102 TGCAGGCATCCTTGTAAAGCATATACGGCGTACCAGTTTCAATTTGACTTTGTA----AG 47157 Query 76449 ATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT------CTT--TC 76500 ||| | | || || ||||| | | | || | | | | ||| || Sbjct 47158 ATTGCAA----ACCATAACTTTTGTGCGGGGATGGTCTTACGGCCCAAACCAGCTTGTTC 47213 Query 76501 ATATT--GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||| | ||||| | | || ||||||||||| ||||| || |||| |||||| || Sbjct 47214 ATACTTGGTGTAAAGAGCC--TCAAATTCATCACCCCAGACTTCATACAAACCTCTGCAC 47271 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 || | || ||||| | | ||| | ||| ||| ||| ||||||||||| | |||| Sbjct 47272 TCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCATAAACAAATCA 47331 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 || |||||||| ||| || ||||||| | ||| || || || || || Sbjct 47332 GGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCACCGTGGTTTTTG 47391 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 ||||| | | || | ||||| | ||||||||| || | |||||| || | | Sbjct 47392 CGCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATATGGCAAACGAA 47451 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 ||| || |||| ||| |||||||| | ||| |||| || | ||| | | | |||| Sbjct 47452 CCCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAAGATACGCAAC 47511 Query 76799 ATTGGAATAATGCCGTTAGA-TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||||||| ||| || ||||| ||| |||||||| || |||||| |||| ||||| Sbjct 47512 ATTGGAACAATACCATTAGACTGT-CCATTTGTACCCCGAATATATGAACCACTCGCACG 47570 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 || || ||| | ||||||||||| || || ||| ||| | ||||| | | Sbjct 47571 TATTTTGTGAATTGCAAGGCCTATTCCACCAGCTGATTTGCTGATGAAGGCACACTGCGT 47630 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 || ||| | | || || | | | |||||| ||| | | | ||||||| ||| Sbjct 47631 CAGTGTATTGAAAATTCCTGCAAGAGAATCATCTTGCATATCCAACAAAAAACAGGAAGA 47690 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 |||||| | || |||||||||||||| | || |||| || || || || | || Sbjct 47691 CATTTGTGGGCGATTGGTTCCTGCATTAAATAGCGTTGGAGTAGCGTGTGTAAAAAACTT 47750 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTG---CTTCTATATC-CCATTGATGAATTC 77093 || | || | ||||||||| ||||| ||| | ||| ||| | || |||| Sbjct 47751 TTGGCTCATTAAGTGGTATGTTTC---AACTGTACGTTCGACATCACCACAG-TGGATTC 47806 Query 77094 CTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCA 77153 | | | ||||||||| ||||| || ||||| ||||| || |||| || || | || Sbjct 47807 CCGCGGAGACACGCATTAACATGTGTTGAGGGCGTTCCACGATCTTGTTGTTGGTACGCA 47866 Query 77154 ACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAA 77202 |||| || || |||||| |||||||| ||||| || | ||| |||||| Sbjct 47867 ACAAATACGAGCGTTCCAATGTTTTAAATCCAAAGTAATCGTACTGAAAA 47916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934319794880