Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq1 89.7 1e-12 >seq2 Length=1844256 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| | ||| |||| || | ||||| || ||||| ||||||||||| | Sbjct 534843 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGA 534784 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| |||||||| ||||| || ||||| | |||||||| || Sbjct 534783 GAGAGTGCGACCGTCCTCCAGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGG 534724 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||| |||||||| || || | || || ||||| | ||||| Sbjct 534723 GATACCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGAC 534664 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 || || ||||| ||||| || || | |||||| || || || ||||| || |||| Sbjct 534663 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATATTGGTATA 534607 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| |||| | ||| |||| || | || || || ||||| |||||||| |||| Sbjct 535072 AACCACCGCGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTGTAATCAG 535013 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || || || ||||| ||||| || || ||||| |||||||| || || || | Sbjct 535012 ACAATGTACGTCCGTCCTCCAGTTGCTTACCAGCAAAAATCAAACGCTGCTGATCCGGGG 534953 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||||||||| |||||||| || || | || || ||||| || ||| | Sbjct 534952 GAATGCCCTCCTTGTCTTGAATCTTTGCCTTGACATTCTCAATTGTGTCACTAGGTTCAA 534893 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || ||||| || || | |||||| || || || ||||| Sbjct 534892 CTTCAAGAGTAATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCAT 534844 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| | ||| |||| || | || || || ||||| ||||| || || | Sbjct 1772206 ACCACCACGCAACCTAAGAACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGA 1772147 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| ||||| || || ||||| ||||| | || ||||| || Sbjct 1772146 GAGAGTACGACCGTCCTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGG 1772087 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| || ||||| || || || | || || ||||| | ||||| Sbjct 1772086 AATGCCCTCTTTGTCCTGAATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGAC 1772027 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATA 283108 || || ||||| ||||| || || | |||||| || || || ||||| || ||||| Sbjct 1772026 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTTACAAAAATTTGCATCTTGATATA 1771970 >seq1 Length=3278253 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3065746 TAGTATAGAGGTTAGTATCCCTGCCTGTCACGCAGGTGACCGGGGTTCGATTCCCCG 3065802 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3066231 TAGTATAGAGGTTAGTATCCCTGCCTGTCACGCAGGTGACCGGGGTTCGATTCCCCG 3066287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739079297886