Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=1844256 Score = 100 bits (110), Expect = 3e-16 Identities = 295/456 (65%), Gaps = 38/456 (8%) Strand=Plus/Plus Query 23503 AATAAA-CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAA 23561 |||||| ||| ||||||| ||||| |||||||||||| || | |||||| || Sbjct 638192 AATAAAGCATCCAAAATCTGCATGTAATCCTTCATCCCTAGATATGAGTTCATTGCTGAA 638251 Query 23562 TGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGA 23621 || | |||||||| ||||| | ||||| | ||| |||| |||| ||| |||||| Sbjct 638252 GGTCAGACCTGGCATCAATCCCCTCTTTTTCAACCAGAATAATGCACAAAAACTTCCGGA 638311 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCAC------------------AAGACG--- 23660 ||| ||||| |||||||| || || | || || |||||| Sbjct 638312 AAACAAAATTCCCTCAACGGCGGCGTATGCGACCTGTAGATCAGGTGTGTAAAGACGCAC 638371 Query 23661 --TGTAC---CAAATGT---------TGCATTATAATCAGAAATCCAtttttttGTCCAA 23706 |||| ||| | | ||| || | |||| |||||||| || ||| Sbjct 638372 ATAGTACTTACAATTCTCTCTGAAAATGCGTTGTTTTCAGTTATCCATTTAGCTGCCCAG 638431 Query 23707 TTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCT 23766 || ||||| ||||| | ||||| || || || | || | ||| |||| Sbjct 638432 TTGGCCTTGTCCTTTACCGCTTGGATTGTGTCTATCGCCCTGAATAACCTCGTTCTTTCA 638491 Query 23767 TCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCA 23826 | | |||| | ||||| | |||||||| | |||||| | || |||||||||||||| Sbjct 638492 GCTTCATCTTTGATATAATTCTCAATTAGGAGACTATATGTCTCTGAATGAATATTTTCT 638551 Query 23827 ATAGCAATCTGAAACCCATAAAAACATCT-AGCTTCAGACAATTGAACATCATTAAAAAA 23885 | || || ||||| |||||||| ||| |||||| | | | ||||| | ||| Sbjct 638552 ACGGCGATTTGAAATGAATAAAAAC-TCTGAGCTTCCGGAAGCTTCACATCTCGGAGAAA 638610 Query 23886 TCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 || || |||||||| |||||| |||||||| Sbjct 638611 CTTTAGTGCCAAATTTTCAAGAACAATTCCATCACT 638646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487941332600