Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 116 9e-21 >seq2 Length=1844256 Score = 116 bits (128), Expect = 9e-21 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| || || |||||||| || || || |||||||| ||||| || || ||| Sbjct 1771982 CAAATTTTTGTAAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGCG 1772039 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || || ||||| ||||||||||||||||| || || ||||| ||||||| Sbjct 1772040 ACACAATTGAAAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAGC 1772099 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || || || || || || || | ||||| | ||||||||| Sbjct 1772100 AGAGGTTGATTTTTGCTGGTAAGCAACTGGAGGACGGTCGTACTCTCTCGGATTATAACA 1772159 Query 178102 TCCAAAAAGA 178111 | ||||| || Sbjct 1772160 TTCAAAAGGA 1772169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731061194746