Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 >seq2 Length=1844256 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||||||||||| |||||||| ||||| ||||| ||||| |||| || Sbjct 534824 ACCAAGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCGTCCTCC 534765 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || ||||||||||| |||| | ||||||||| | || | | |||||||| | || Sbjct 534764 AGTTGTTTGCCGGCGAAAATCAACCTCTGTTGGTCTGGAGGGATACCCTCCTTGT-CTTG 534706 Query 41774 ATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | |||| ||| | | | |||||||| | ||| ||||| | || || || || Sbjct 534705 AATCTTTGCCTTGACATTCTCAATCGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 534646 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || |||||||| ||||| ||||| || Sbjct 534645 GCCAGTGAGAGTCTTTACAAAAATTTGCATATT 534613 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || || |||||||| ||||||||||| || ||||| || || |||| || Sbjct 1772187 ACCAAGTGAAGAGTACTCTCCTTTTGAATGTTATAATCCGAGAGAGTACGACCGTCCTCC 1772128 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || || || |||| | ||| ||||| | |||| || ||| |||||| || Sbjct 1772127 AGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCC-TG 1772069 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | || | | |||||||| | ||| ||||| | || || || || Sbjct 1772068 AATCTTGGCCTTGACATTTTCAATTGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTT 1772009 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || |||||||| ||||| ||||| || Sbjct 1772008 GCCAGTGAGAGTCTTTACAAAAATTTGCATCTT 1771976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303947990800