Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 3e-14 seq1 93.3 9e-14 seq4 84.2 5e-11 >seq2 Length=1971884 Score = 95.1 bits (104), Expect = 3e-14 Identities = 324/498 (65%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600 ||||| | | ||| | |||||||| ||||| |||| || |||||||||| ||| Sbjct 930114 TTGTCAATTACGTCAATTGGATTATAGCTGGGGATGTATGTGCTAAAACCGGTTCCGATA 930173 Query 281601 CCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATT 281660 || | || || ||||| | | || || || || | ||| | | ||||| ||| Sbjct 930174 CCCTCAGCTCCGTTAACCAACACCATTGGTATTATGGGCAAATAGTAATACGGTTCTATT 930233 Query 281661 TTATCACCATCATCATACAAATACTTCAGAA---GGTTATCATC-TGTATCGACGAAAAC 281716 | | |||||||||| || | || | ||| ||| || |||| ||| | Sbjct 930234 ATTTGCCCATCATCATTTTGGTAGTCAAGTATCGGGTCATCTTCCTGTAG----GAATA- 930288 Query 281717 CTGTCGCGTCTTAGGGTT--CAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTA 281774 ||| ||| |||| | | ||| |||||||| || || | ||| || ||||||| Sbjct 930289 -TGTACCGTGTTAGTGGTGACAGCTTCGTGAATATGTAACGTGCTGCTGCTGCGTCTTTA 930347 Query 281775 CCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTC 281834 ||||||| ||| |||||||| || || | | ||||||||| || Sbjct 930348 CCACCCTCTTTCCTGCTACCAAACTGTCCACATGGAAGGAGTAGGTTAATGTTGTTTGAG 930407 Query 281835 CCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGA 281894 || || | ||||| |||| ||| || |||||| || | ||| |||||||||||| Sbjct 930408 CCTACAAAGTCCTGTGCCATGTTTACAATTGTCTGTTGTAACGAGTTTTCACCGTGGTGA 930467 Query 281895 TAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTT-CACGTCTGATGTCAA 281953 || || ||| || |||| || ||| | | ||||||||||| ||| || |||| Sbjct 930468 TAAGCTGAGTGCTCAGCAATGTATCCAGTAAGTTGTGCTACCTTACAC-TCGTTCTTCAA 930526 Query 281954 GTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGAC 282013 ||| || || ||| || | | || || || || || |||||||| || |||| || Sbjct 930527 GTTACGCTTAAAACAGCCAAACAAAACCTTACGCTGTCCCGGCTTGAACCCGTCAATCAC 930586 Query 282014 AGACGGAATGCTGCGTTC 282031 || || ||||| || || Sbjct 930587 TGATGGTATGCTACGCTC 930604 >seq1 Length=2540030 Score = 93.3 bits (102), Expect = 9e-14 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2463778 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAGCCCC 2463723 >seq4 Length=570487 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct 31426 TAGCTCAGTCGGAAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 31481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823878019670