Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=1317241 Score = 114 bits (126), Expect = 2e-20 Identities = 709/1128 (63%), Gaps = 26/1128 (2%) Strand=Plus/Plus Query 53528 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 53587 ||||||| ||||| || |||| ||| || ||||||||||| |||||| | ||| Sbjct 1115690 TCTGCTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCT 1115749 Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 | | | ||| || ||||| | || || | |||||| ||||| | || | || Sbjct 1115750 TGTTTCACAGGGTAGTAATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTAC 1115805 Query 53648 ACCACATCCTTCA----GTTTGAGAAAATCAAAT-----TGTCCATCTATTA-CAAACAT 53697 || || |||| |||| ||||| ||| |||| | ||| ||||| | Sbjct 1115806 ACGGCAGATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTT 1115865 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || || | || || | |||||| || || ||||| | | | |||| | Sbjct 1115866 TGGCAGCGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGAC 1115925 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 || ||| ||| || ||||| | || || || || ||||| || || |||||||| Sbjct 1115926 GATTTCACAGCAGAGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGC 1115985 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 |||||| || ||||| || | ||| | || || ||||| || || ||||| | | ||| Sbjct 1115986 GTTACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAAT 1116045 Query 53878 CGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT--CTTTTCTCTTTCGTAT 53935 || ||| | | || ||| | || || | | | || | | || Sbjct 1116046 TGCAAACCACAACTTCTGGGCTGGGATTGTCT-TTCGTCCCAAGCCCTGCTGCT-CATAC 1116103 Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 53995 | |||||||| ||||||||||||||||||||||| | || || || ||| ||||| Sbjct 1116104 TGAGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCT 1116163 Query 53996 GGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATCAGGA 54052 |||||||||| | ||| | || | || ||| ||||||||||| || || || || Sbjct 1116164 GGACACATCAGTGTCCAAT-TC--TTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGG 1116220 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 ||||| || || |||| ||| || | | || || || || || || | Sbjct 1116221 ATCCACAGCGCGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTG 1116280 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||||| | ||| | |||||| | |||||| || |||| ||||| | | || Sbjct 1116281 AGATCTAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCT 1116340 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 ||||| || || || || | ||| | || || ||| | | ||| ||| Sbjct 1116341 TTACGTTTTCCACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATG 1116400 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 54292 || | || || ||||| || ||||| || || || ||| ||||| | || Sbjct 1116401 GGCACGATCCCGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATT 1116460 Query 54293 TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 54352 || ||||| || || || || || || |||| || || ||||| | | || Sbjct 1116461 TTGTGAATTGCAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAG 1116520 Query 54353 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 54412 || | | | || || | | ||| || ||||| |||||| || || |||||| Sbjct 1116521 GTGTTAAAAATCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATT 1116580 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 || | | || |||||||| ||||| || || || | ||||| || || | || | Sbjct 1116581 TGAGGGTGCCTGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGA 1116640 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGC 54531 | || | || |||| ||| | || | || | ||| | || || ||| | | Sbjct 1116641 CTCATGAGGTGATAGGTCTGGATCG-TGCGTTCCAAATCTCCGCAGTGGATGCCTGCAGA 1116699 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 || ||||||| ||||||||| || | ||||||||||| ||| | |||||||| || Sbjct 1116700 AACGCGCATTATCATGTGCTGCGGACGCTCAACGATCTTCCCGTTCGTCTTCAGCAAATA 1116759 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 || | |||| || ||||| ||||| || | || |||||| || Sbjct 1116760 AGACCTCTCCAGGGTCTTAAAGCCAAAGTAATCATACTGAAAGTCGCG 1116807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721533206320