Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 102 9e-17 >seq1 Length=2540030 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | ||| ||||| || | ||||| ||||| || || ||||| ||| | Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | || |||| |||||||||||| ||||| | | ||| ||||| | || Sbjct 1523396 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523455 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||| ||| | || | || | || | | ||||||||| | || || Sbjct 1523456 ATTCCTTCCTTATCC-TGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523514 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || ||||| || || || || ||||| |||||||| Sbjct 1523515 CTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | | ||| ||||| | ||||||||||| || |||||||| ||| Sbjct 1523564 CCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTG 1523623 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | | || ||||||||||||||||| ||||| | | ||| ||||| | || Sbjct 1523624 AGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523683 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||| ||| | || | || | || | | ||||||||| | || || Sbjct 1523684 ATTCCTTCCTTATCC-TGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523742 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || || ||||| || |||| || || || || || ||||| || Sbjct 1523743 CTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 || ||||| | || || |||||||| || ||||| ||| || ||||| | || ||| Sbjct 2214247 ACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCT 2214306 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||||||||| ||||| | | ||| ||||| | || | || ||||| | | || Sbjct 2214307 AACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTAT-CTTG 2214365 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | || | | ||||||||| | || || |||| || || ||||| Sbjct 2214366 AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTT 2214425 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||| || || || || |||||||| || Sbjct 2214426 TCCTGTTAAAGTTTTGACGAATATTTGCATCTT 2214458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| |||| |||||||||||||||| ||||||||| || Sbjct 250449 CTCCAGGGCGGGGAATCGAACCCCGGTCACCCGCGTGACAGGCGGGGATACTCACCTCTG 250508 Query 60126 TACTACCGAGGAT 60138 ||||||| |||| Sbjct 250509 TACTACCCCGGAT 250521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817535670520