Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 5e-11 >seq3 Length=1317241 Score = 84.2 bits (92), Expect = 5e-11 Identities = 187/278 (67%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 248816 AGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCA 248875 |||| |||| ||||| || || || ||||||| || ||| | || || | | || | Sbjct 1116797 AGTATGATTACTTTGGCTTTAAGACCCTGGAGAGGTCTTATTTGCTGAAGACGAACGGGA 1116738 Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935 ||||||| || || ||||||||| | ||||| || ||| || || ||| | | Sbjct 1116737 AGATCGTTGAGCGTCCGCAGCACATGATAATGCGCGTTTCTGCAGGCATCCACTGCGGAG 1116678 Query 248936 ACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGACACATGCC 248994 | | || || | || |||| || |||| | ||||| |||| | | ||||| || Sbjct 1116677 ATTTGGAACGCACGATCCAGACCTATCACCTCA-TGAGTCAACGTTACTTCACACACGCA 1116619 Query 248995 ACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTT 249054 || ||||| | || ||||| || ||| || ||| || ||| ||||| || ||| Sbjct 1116618 ACGCCGACTTTGTTTAACGCGGGAACCAGGCACCCTCAAATGTCCTCTTGCTTCCTACTT 1116559 Query 249055 GCCATGCAAGACGACTCTGTCGACGGCATTTATGACAC 249092 | |||||||||||| || | | || |||| | |||| Sbjct 1116558 GACATGCAAGACGATTCCCTGGCTGGGATTTTTAACAC 1116521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766276181312