Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=2540030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || |||||||||||| | || ||||| || |||||| |||| || || | ||| Sbjct 1523562 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAGACTATAACCCTCGAGGTTGAGCCTAGC 1523503 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | |||||||| || ||| | || ||||| | || ||||| Sbjct 1523502 GACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAA 1523443 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || |||| ||| || || || | || ||| | |||| ||| || |||| | Sbjct 1523442 CAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAAC 1523383 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 || ||||| || ||||||||| || || || Sbjct 1523382 ATCCAGAAGGAAAGCACGCTTCACTTGGTTTT 1523351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| ||||| || ||||| ||||| || ||||| |||||| |||| || || | ||| Sbjct 2214455 ATGCAAATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 2214396 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | |||||||| || ||| | || |||||| | || ||||| Sbjct 2214395 GACACGATAGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCAGACCAA 2214336 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || |||| ||| || || || | || ||| | |||| ||| || |||| | Sbjct 2214335 CAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAAC 2214276 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCA 25065 || || || || || ||||||||||| | | ||||| || || ||||| Sbjct 2214275 ATCCAAAAGGAAAGTACCCTTCATTTAGTACTGAGGTTGCGTGGTGG--AATCA 2214224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || ||||| ||||| || ||||| |||||| |||| || || | ||| Sbjct 1523790 ATGCAGATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 1523731 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | |||||||| || ||| | || ||||| | || ||||| Sbjct 1523730 GACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAA 1523671 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | || |||| ||| || || || || || ||| | || | | || |||| Sbjct 1523670 CAGAGGTTGATATTTGCTGGTAAGCAGCTAGAGGATGGTAGAACACTCAGTGACTACAAT 1523611 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| ||| || ||||||||| | || | | |||||| Sbjct 1523610 ATCCAGAAGGAGAGCACCCTACATTTAGTGCTTAGACTCAGAGGAGGT 1523563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418303954117280