Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 >seq3 Length=1317241 Score = 138 bits (152), Expect = 1e-27 Identities = 1149/1838 (63%), Gaps = 70/1838 (4%) Strand=Plus/Plus Query 62081 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62140 || |||||| | ||||||||| | ||| |||| || ||||| ||||||||||| || Sbjct 1114999 TAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATACTCGTGAG 1115058 Query 62141 TTTG--GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 62198 || |||| |||| | | | || || || || | |||||| || || ||||| Sbjct 1115059 CTTACTGAATG--TCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAATGAAA 1115116 Query 62199 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGCAATTTCCCAAATAGTTTT 62257 || | ||||| ||||| | || || || ||| || ||| ||||||| ||||| Sbjct 1115117 ATGCCACGATCTGCCGCCATGTCGATTAT-GTGTTTCTGCTTAATCTCCCAAACTGTTTT 1115175 Query 62258 ATA-AACTCGCTTAATATCTTCTGGAAG---GTTTGTATTCTGAATGGATCCACCATCTA 62313 ||| || || |||||||| | ||| | || | | || | || || | Sbjct 1115176 ATACAAATC-CTTAATATGCTGTGGGATCTCGTCAATGTGCTTTAGTGACCCGTTGTAGG 1115234 Query 62314 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 62373 | || | | | | || || || ||||| | | ||| | || | | || | Sbjct 1115235 CGATTAGCTTCTGTTTCATTGTCTCGTTCCAGAGCCCTAGCTCAATCAAGTCATTCAGCA 1115294 Query 62374 GATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 62433 |||| || || || || || || ||| ||| ||||| | |||||||||||| | Sbjct 1115295 GATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTACTAG 1115354 Query 62434 TATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 62493 | || ||||| | ||| ||||| || || | ||| |||| ||| || || ||||| | Sbjct 1115355 TGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGCATTG 1115414 Query 62494 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGATGTTC 62551 |||| | ||||| |||||| || || |||||| || | | |||| || | || Sbjct 1115415 GTGCAATGAATAAGGAATTTCTTAGCCC--ATGTTCACGGAGATCAGCTTTAAGTTTATC 1115472 Query 62552 CCAATTCCAAAG------ATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACC 62605 ||| | ||| || |||| || || | | |||||| | ||| Sbjct 1115473 CCAGTCCCAGAGCGAATTATCC-ACCTTAG--CTCCCCAAAGGTCAAATTGTAATAAACC 1115529 Query 62606 GTTACTGGCGTACGATCCTACATATGTATCATATGGTCC----TTCCTTCTCAGCTAGTT 62661 || ||| |||||| ||||||| ||||| | || | |||| || || | Sbjct 1115530 CTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTT----GCCAGAT 1115585 Query 62662 TACAACTCGCCTCTAA---TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT 62718 | |||| | || |||| || || || |||||||| || ||||| || | Sbjct 1115586 CAATACTCTCAGACAAACATGCA---TAGTACATTGTTTCAAAAATGCGTTTATTAAGTT 1115642 Query 62719 CTTGTGCTTCCGGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62776 || | || || | || || || || || | || || || | || |||| || Sbjct 1115643 CTCGAGCCTC--GTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCC 1115700 Query 62777 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62836 ||| || |||| ||| || ||||||||||| |||||| | |||| | | ||| Sbjct 1115701 TTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGG 1115760 Query 62837 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62896 || ||||| | || || | |||||| || || | || | || || || || Sbjct 1115761 GTAGTAATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTACACGGCAGATTT 1115816 Query 62897 CA----GTTTGAGAAAATCAAATCGCCCA-TCTA-----TTACAAACATGTTCAATGCAA 62946 || |||| ||||| ||| || ||| | |||||| | || || | Sbjct 1115817 CATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTA 1115876 Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006 | || || | ||||||||| || ||||| | | | |||| | || ||| || Sbjct 1115877 CTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGC 1115936 Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066 | || ||||| | || ||||| || ||||| || || |||||||| |||||| || | Sbjct 1115937 AGAGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGT 1115996 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 |||| || | ||| | ||||| ||||| || || || || | | ||| || ||| | Sbjct 1115997 CCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACA 1116056 Query 63127 -CGACTCGAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGAGTATACA 63183 | || | || ||| | || || | || | || | | || ||||||||| Sbjct 1116057 ACTTCTGG-GCTGGGATTGTCT-TTCGTCCCAAGCCCTGCTGCT-CATACTGAGTATACA 1116113 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 | ||||| ||||||||||||||||| | || || | ||| ||||| |||||||||| Sbjct 1116114 AACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCA 1116173 Query 63244 ACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 | ||| | || | || ||| ||||||||||| || || || || ||||| || | Sbjct 1116174 GTGTCCAAT-TC--TTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCG 1116230 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 | |||| ||| |||| | || || || || || || | ||||| | | Sbjct 1116231 CGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACA 1116290 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 || | |||||| | |||||| || |||| ||||| || | || ||||| Sbjct 1116291 ACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTC 1116350 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 || || || || | ||| | || || ||| | | ||| ||| || | || | Sbjct 1116351 CACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCC 1116410 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTG 63540 |||| || || || ||||| || || || ||| ||||| | || || ||||| Sbjct 1116411 CGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTG 1116470 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 || || ||||| || || |||| || || ||||| | | || |||| | | | Sbjct 1116471 CAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAA 1116530 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 | || | | | ||| || ||||| |||||| || || |||||||| | | Sbjct 1116531 TCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCC 1116590 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 | |||||||| ||||| || || || | ||||| || || | || | | || | Sbjct 1116591 TGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGACTCATGAGGT 1116650 Query 63721 TGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 || |||| || | || | || | ||| | || || ||| | | || |||||| Sbjct 1116651 GATAGGTCTGGATCG-TGCGTTCCAAATCTCCGCAGTGGATGCCTGCAGAAACGCGCATT 1116709 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| || | ||||| || || ||| | |||| ||| || || | ||| Sbjct 1116710 ATCATGTGCTGCGGACGCTCAACGATCTTCCCGTTCGTCTTCAGCAAATAAGACCTCTCC 1116769 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 | || ||||| ||||| || | || |||||| || Sbjct 1116770 AGGGTCTTAAAGCCAAAGTAATCATACTGAAAGTCGCG 1116807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817529145520