Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 >seq3 Length=1317241 Score = 114 bits (126), Expect = 2e-20 Identities = 1144/1838 (62%), Gaps = 70/1838 (4%) Strand=Plus/Plus Query 64874 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 64933 || |||||| | ||||||||| | ||| |||| || ||||| ||||||||||| || Sbjct 1114999 TAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATACTCGTGAG 1115058 Query 64934 TTTG--GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 64991 || |||| |||| | | | || || || || | |||||| || || ||||| Sbjct 1115059 CTTACTGAATG--TCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAATGAAA 1115116 Query 64992 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTT 65050 || | ||||| ||||| | || || || ||| || ||| ||||||| ||||| Sbjct 1115117 ATGCCACGATCTGCCGCCATGTCGATTAT-GTGTTTCTGCTTAATCTCCCAAACTGTTTT 1115175 Query 65051 ATA-AACTCGCTTAATATCTTCTGGAAG---GTTTGTATTCTGAATGGATCCACCATCTG 65106 ||| || || |||||||| | ||| | || | | || | || || | | Sbjct 1115176 ATACAAATC-CTTAATATGCTGTGGGATCTCGTCAATGTGCTTTAGTGACCCGTTGTAGG 1115234 Query 65107 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 65166 | || | | | | || || || ||||| | | ||| | || | | || | Sbjct 1115235 CGATTAGCTTCTGTTTCATTGTCTCGTTCCAGAGCCCTAGCTCAATCAAGTCATTCAGCA 1115294 Query 65167 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 65226 |||| ||||| || || ||| || ||| ||| ||||| | |||||||||||| | Sbjct 1115295 GATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTACTAG 1115354 Query 65227 TATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 65286 | || ||||| | || ||||| || || | ||| |||| ||| || || ||||| | Sbjct 1115355 TGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGCATTG 1115414 Query 65287 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTC 65344 |||| | ||||| |||||| || || |||||| || | | |||| || || Sbjct 1115415 GTGCAATGAATAAGGAATTTCTTAGCCC--ATGTTCACGGAGATCAGCTTTAAGTTTATC 1115472 Query 65345 CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC 65398 ||| | ||| || |||| || || | ||||| | ||| Sbjct 1115473 CCAGTCCCAGAGCGAATTATCC-ACCTTAG--CTCCCCAAAGGTCAAATTGTAATAAACC 1115529 Query 65399 GTTACTGGCGTACGATCCTACATATGTATCGTATGGTCC----TTCCTTCTCAGCTAGTT 65454 || ||| |||||| ||||||| || || | || | |||| || || | Sbjct 1115530 CTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTT----GCCAGAT 1115585 Query 65455 CACAACTCGCCTCTAA---TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 65511 || |||| | || |||| || || || ||||| || || ||||| || | Sbjct 1115586 CAATACTCTCAGACAAACATGCA---TAGTACATTGTTTCAAAAATGCGTTTATTAAGTT 1115642 Query 65512 CTTGTGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 65569 || | || || | || || || || || | || || || | ||||||| || Sbjct 1115643 CTCGAGCCTC--GTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCC 1115700 Query 65570 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 65629 ||| || |||| ||| || ||||||||||| |||||| | |||| | | ||| Sbjct 1115701 TTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGG 1115760 Query 65630 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 65689 || ||||| | || || | |||||| || || | || | || || || || Sbjct 1115761 GTAGTAATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTACACGGCAGATTT 1115816 Query 65690 CA----GTTTGAGAAAATCAAATCGC----TCATC-TATTA-CAAACATGTTCAATGCAA 65739 || |||| ||||| ||| | || | | ||| ||||| | || || | Sbjct 1115817 CATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTA 1115876 Query 65740 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 65799 | || || | |||||| || || ||||| | | | |||| | || ||| || Sbjct 1115877 CTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGC 1115936 Query 65800 AAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 65859 | || ||||| | || || || || ||||| || || |||||||| |||||| || | Sbjct 1115937 AGAGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGT 1115996 Query 65860 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 |||| || | ||| | ||||| ||||| || || || || | | ||| || ||| | Sbjct 1115997 CCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACA 1116056 Query 65920 -CGACTCGAGCCTTTATTATAGATTTGTATCT--CTTTTCTCTTTCGTATAGTGTATACA 65976 | || | || ||| | || || | | | || | | || | ||||||| Sbjct 1116057 ACTTCTGG-GCTGGGATTGTCT-TTCGTCCCAAGCCCTGCTGCT-CATACTGAGTATACA 1116113 Query 65977 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 66036 | ||||| ||||||||||||||||| | || || || ||| ||||| |||||||||| Sbjct 1116114 AACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCA 1116173 Query 66037 ACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093 | ||| | || | || ||| ||||||||||| || || || || ||||| || | Sbjct 1116174 GTGTCCAAT-TC--TTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCG 1116230 Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153 | |||||||| || | | || || || || || || | ||||| | | Sbjct 1116231 CGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACA 1116290 Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213 || | |||||| |||||| || |||| ||||| || | || ||||| Sbjct 1116291 ACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTC 1116350 Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273 || || || || | ||| | || || ||| | | ||| ||| || | || | Sbjct 1116351 CACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCC 1116410 Query 66274 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTG 66333 | ||||| | || ||||| || || || ||| || || | || || ||||| Sbjct 1116411 CGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTG 1116470 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 || || ||||| || || |||| || || ||||| | | || || | | | | Sbjct 1116471 CAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAA 1116530 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 | || | | ||| || ||||| |||||| || || |||||||| | | | Sbjct 1116531 TCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCC 1116590 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 | |||||||| ||||| || || || | ||||| || || | || | | || | Sbjct 1116591 TGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGACTCATGAGGT 1116650 Query 66514 TGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 || |||| || | || | || | ||| | || || ||| | | || |||||| Sbjct 1116651 GATAGGTCTGGATCG-TGCGTTCCAAATCTCCGCAGTGGATGCCTGCAGAAACGCGCATT 1116709 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 | ||||||||| || | ||||||||||| ||| | |||| ||| || || | ||| Sbjct 1116710 ATCATGTGCTGCGGACGCTCAACGATCTTCCCGTTCGTCTTCAGCAAATAAGACCTCTCC 1116769 Query 66633 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 | || ||||| ||||| || | || |||||| || Sbjct 1116770 AGGGTCTTAAAGCCAAAGTAATCATACTGAAAGTCGCG 1116807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172725955560