Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 212 9e-50 >seq3 Length=1317241 Score = 212 bits (234), Expect = 9e-50 Identities = 1154/1824 (63%), Gaps = 42/1824 (2%) Strand=Plus/Plus Query 78753 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAG 78812 || |||||| | ||||||||| | ||| |||| || || || ||||||||||| || Sbjct 1114999 TAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATACTCGTGAG 1115058 Query 78813 TTTG--GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 78870 || |||| |||| | | | || || || || | |||||| || || ||||| Sbjct 1115059 CTTACTGAATG--TCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAATGAAA 1115116 Query 78871 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTT 78929 || | ||||| ||||| | || || || ||| || ||| ||||||| ||||| Sbjct 1115117 ATGCCACGATCTGCCGCCATGTCGATTAT-GTGTTTCTGCTTAATCTCCCAAACTGTTTT 1115175 Query 78930 ATA-AACTCGCTTAATATCTTCTGGAAG---GTTTGTATTCTGAATGGATCCACCATCTG 78985 ||| || || |||||||| | ||| | || | | || | || || | | Sbjct 1115176 ATACAAATC-CTTAATATGCTGTGGGATCTCGTCAATGTGCTTTAGTGACCCGTTGTAGG 1115234 Query 78986 CCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 79045 | || | | | | || || || ||||| | | ||| | || | | || | Sbjct 1115235 CGATTAGCTTCTGTTTCATTGTCTCGTTCCAGAGCCCTAGCTCAATCAAGTCATTCAGCA 1115294 Query 79046 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 79105 |||| ||||| || || ||| || ||| ||| ||||| | |||||||||||| | Sbjct 1115295 GATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTACTAG 1115354 Query 79106 TATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAG 79165 | || ||||| | ||||||||| || || | ||| |||| ||| ||||| ||||| | Sbjct 1115355 TGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGCATTG 1115414 Query 79166 GTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCC 79225 |||| | ||||| |||||| || || | | | || | | |||| || |||| Sbjct 1115415 GTGCAATGAATAAGGAATTTCTTAGCCCATGTTCACGGAGATCAGCTTTAAGTTTATCCC 1115474 Query 79226 AATCCCAAAG---ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTAC 79282 | ||||| || || | | | | |||||| ||| |||||| | ||| || Sbjct 1115475 AGTCCCAGAGCGAATTATCCACCTTAGCTCCCCAAAGGTCAAATTGTAATAAACCCTTGG 1115534 Query 79283 TAGCGTATGATCCTGTGTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAAC 79339 || ||||||| ||||||||||||| || || | || || | ||| || Sbjct 1115535 AGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTT---GCCAGATCAATAC 1115591 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTT 79399 || | || | | || || || ||||| ||||| ||||| || ||| | || Sbjct 1115592 TCTCAGACAAACATGCATAGTACATTGTTTCAAAAATGCGTTTATTAAGTTCTCGAGC-- 1115649 Query 79400 CTAGGCT--ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACC 79457 || | || || || || || | || || || | ||||||| ||||| || || Sbjct 1115650 CTCGTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCCTTGTACCCC 1115709 Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 || ||| || ||||||||||| |||||||| |||| | | ||| || ||||| Sbjct 1115710 AACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTAATT 1115769 Query 79518 AATATCTATAATTTTATTGAGATTCCTGACT-ATTACTTTGACCACATCCTTTAGTTTGA 79576 | || || | |||||| || || | | | ||||| | | || | ||||| Sbjct 1115770 CCTGTCAATTACTTTATTAAGGTT-ATAAGTGATTACACGGCAGATTTCATAGAGTTTTT 1115828 Query 79577 GAAAATCAAATCGTCCATCT-------ATTACAAACATGTTCAACGCGACAGATGCCAGA 79629 ||||| ||| |||| | | | |||||| | || ||| || || || | | Sbjct 1115829 TGAAATCGAAT-GTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTACTGAAGCTAAA 1115887 Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 ||||| || || ||||| | | | |||| | |||||| |||||||||||| Sbjct 1115888 TTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGCAGAGGTTACTG 1115947 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 | ||||| || || ||||| || || |||||||| |||||| || ||||| || | Sbjct 1115948 GATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGTCCTTGTATAAC 1116007 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGAGC 79808 ||| ||||||| ||||| || || || || | | ||| || ||| || || | || Sbjct 1116008 ATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACAACTTCT-GGGC 1116066 Query 79809 CTTTATTATAGACTTGTATCTCTTTTC--TCT-TTCGTATTGTGTATATAATCGTTCGAA 79865 | || | ||| || | | || || || || ||||| || ||||| || Sbjct 1116067 ---TGGGATTGTCTTTCGTCCCAAGCCCTGCTGCTCATACTGAGTATACAAACGTTCAAA 1116123 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTC 79925 ||||||||||||||| |||| | || ||| || || |||||||||| | ||| | Sbjct 1116124 CTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCAGTGTCCAATT 1116183 Query 79926 TCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 79985 || ||| ||||||||||| || || || || ||||| || || |||| ||| Sbjct 1116184 CTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATC 1116243 Query 79986 TCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 80045 || | | || || || || || || | ||||| | ||| | |||||| Sbjct 1116244 CCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATC 1116303 Query 80046 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATC 80105 | |||||| || |||| ||||| || | || ||||| || || || || Sbjct 1116304 CGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTC 1116363 Query 80106 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 80165 | ||| | || || ||| | | ||| ||| || | || || ||||| | || Sbjct 1116364 CACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCC 1116423 Query 80166 ATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 80225 ||||| || || || ||| ||||| | || || ||||| || || ||||| Sbjct 1116424 GTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTGCAAGTCCGATTCC 1116483 Query 80226 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCT 80285 || || |||| || || ||||| | | || || | | | || || | | | Sbjct 1116484 ACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAATCCCAGCCAGGGA 1116543 Query 80286 ATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 80345 ||| || ||||| |||||| || || |||||||| | | || |||||||| || Sbjct 1116544 ATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCCTGGTTCCCGCGTT 1116603 Query 80346 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 80405 ||| || || || | ||||| || || | || | || || | || |||| || Sbjct 1116604 AAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGACTCATGAGGTGATAGGTCTGGAT 1116663 Query 80406 AGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 | ||| | ||| | || || ||| | | || ||||||| ||||||||| || Sbjct 1116664 CGTGCGTTCCAAATCTCCGCAGTGGATGCCTGCAGAAACGCGCATTATCATGTGCTGCGG 1116723 Query 80466 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACC 80525 | ||||||||||| || | |||| ||| ||||| | |||| || ||||| || Sbjct 1116724 ACGCTCAACGATCTTCCCGTTCGTCTTCAGCAAATAAGACCTCTCCAGGGTCTTAAAGCC 1116783 Query 80526 AAAATAGTTGTATGAAAAGTCTCG 80549 ||| || | || |||||| || Sbjct 1116784 AAAGTAATCATACTGAAAGTCGCG 1116807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268719194760