Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 >seq1 Length=2540030 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | ||| | ||| |||||||| |||||||| || || ||||| || || | Sbjct 1523563 ACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACT 1523622 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| || | || || || ||||||||||||| || ||||| |||| Sbjct 1523623 GAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523682 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| ||| || || || | | | || || ||||| || Sbjct 1523683 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523742 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || |||||||| || || ||||| ||||| Sbjct 1523743 CTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777561085332