Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=2540030 Score = 100 bits (110), Expect = 2e-16 Identities = 171/247 (69%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | | || | ||||||||| || ||||||||||| || || ||||| ||| Sbjct 1523563 ACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACT 1523622 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || | ||||| ||||||||||| | | || || | ||| || || || Sbjct 1523623 GAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523682 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | | |||| || ||| ||| ||| Sbjct 1523683 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523742 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGATC 48738 ||||| ||||| ||||| || || | |||||| || || |||||||| || ||| ||| Sbjct 1523743 CTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATTGCCTT-ATC 1523801 Query 48739 GAAGAAA 48745 | ||||| Sbjct 1523802 GTAGAAA 1523808 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || |||||||| | ||||||||||| || || |||||||| |||||||| ||| | Sbjct 2214229 CCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACTC 2214288 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | ||||| | ||||||||| | | || || | ||| || || | Sbjct 2214289 AA-AGTC-CTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 2214346 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| || ||| || ||| | | | |||| || ||| ||| ||| Sbjct 2214347 GGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 2214406 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 ||||| ||||| ||||| || || | |||||| || || || |||||| |||| Sbjct 2214407 CCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCATCTTGTC 2214461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251153794009