Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=2540030 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 94765 TTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824 ||| || ||||| | |||||||| | | ||| |||||||| | || |||||| || Sbjct 1523321 TTTTAACTTTTATAA-CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTG 1523379 Query 94825 CACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 | ||| || || |||| ||| | |||||| | ||| || || |||| || || || Sbjct 1523380 GATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCT 1523439 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 || || ||||||||||| ||||| || || | ||| || ||||| || | | || Sbjct 1523440 CTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGT 1523499 Query 94945 GTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCT 95003 ||| || || || || || | || || || || ||||| || ||||| ||||| || | Sbjct 1523500 GTC-GCTAGGCTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTT 1523558 Query 95004 GCAT 95007 |||| Sbjct 1523559 GCAT 1523562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||| | || | ||| || || | || ||||| || | Sbjct 1523551 AAAAATTTGCATACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGAT 1523610 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || || | ||||| | |||||| ||||| || || |||| || || || Sbjct 1523611 ATTGTAGTCACTGA--GTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTC 1523668 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||||||||| ||||| || || | ||| || ||||| || | | ||| Sbjct 1523669 TGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTG 1523728 Query 94946 TCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 || || || || || || | || || |||||||| || | |||||| || || ||||| Sbjct 1523729 TC-GCTAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTG 1523787 Query 95005 CAT 95007 ||| Sbjct 1523788 CAT 1523790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291149567240