Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 >seq3 Length=1317241 Score = 141 bits (156), Expect = 1e-28 Identities = 1149/1838 (63%), Gaps = 70/1838 (4%) Strand=Plus/Plus Query 62030 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62089 || |||||| | ||||||||| | ||| |||| || ||||| ||||||||||| || Sbjct 1114999 TAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATACTCGTGAG 1115058 Query 62090 TTTG--GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAG 62147 || |||| |||| | | | || || || || | |||||| || || ||||| Sbjct 1115059 CTTACTGAATG--TCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAATGAAA 1115116 Query 62148 GCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTTTT 62206 || | ||||| ||||| | || || || ||| || ||| ||||||| ||||| Sbjct 1115117 ATGCCACGATCTGCCGCCATGTCGATTAT-GTGTTTCTGCTTAATCTCCCAAACTGTTTT 1115175 Query 62207 ATA-AACTCGCTTAATATCTTCTGGAAG---GTTTGTATTCTGAATGGATCCACCATCTG 62262 ||| || || |||||||| | ||| | || | | || | || || | | Sbjct 1115176 ATACAAATC-CTTAATATGCTGTGGGATCTCGTCAATGTGCTTTAGTGACCCGTTGTAGG 1115234 Query 62263 CCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGA 62322 | || | | | | || || || ||||| | | ||| | || | | || | Sbjct 1115235 CGATTAGCTTCTGTTTCATTGTCTCGTTCCAGAGCCCTAGCTCAATCAAGTCATTCAGCA 1115294 Query 62323 GATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGG 62382 |||| ||||| || || ||| || ||| ||| ||||| | |||||||||||| | Sbjct 1115295 GATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTACTAG 1115354 Query 62383 TATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 62442 | || ||||| | ||| ||||| || || | ||| |||| ||| || || ||||| | Sbjct 1115355 TGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGCATTG 1115414 Query 62443 GTGCCACCAATAAACTATTTCTAAGACCGTATGTTCT--GATTTTATCTTTTAGAGGTTC 62500 |||| | ||||| |||||| || || |||||| || | | |||| || || Sbjct 1115415 GTGCAATGAATAAGGAATTTCTTAGCCC--ATGTTCACGGAGATCAGCTTTAAGTTTATC 1115472 Query 62501 CCAATTCCAAAG------ATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACC 62554 ||| | ||| || |||| || || | ||||| | ||| Sbjct 1115473 CCAGTCCCAGAGCGAATTATCC-ACCTTAG--CTCCCCAAAGGTCAAATTGTAATAAACC 1115529 Query 62555 GTTACTGGCGTACGATCCTACATATGTATCGTATGGTCC----TTCCTTCTCAGCTAGTT 62610 || ||| |||||| ||||||| || || | || | |||| || || | Sbjct 1115530 CTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTT----GCCAGAT 1115585 Query 62611 CACAACTCGCCTCTAA---TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 62667 || |||| | || |||| || || || ||||| || || ||||| || | Sbjct 1115586 CAATACTCTCAGACAAACATGCA---TAGTACATTGTTTCAAAAATGCGTTTATTAAGTT 1115642 Query 62668 CTTGTGCTTCCAGGCTA--TCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCC 62725 || | || || | || || || || || | || || || | || |||| || Sbjct 1115643 CTCGAGCCTC--GTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCC 1115700 Query 62726 TTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGG 62785 ||| || |||| ||| || ||||||||||| |||||| | |||| | | ||| Sbjct 1115701 TTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGG 1115760 Query 62786 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTT 62845 || ||||| | || || | |||||| || || | || | || || || || Sbjct 1115761 GTAGTAATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTACACGGCAGATTT 1115816 Query 62846 CA----GTTTGAGAAAATCAAATCGCCCA-TCTA-----TTACAAACATGTTCAAGGCAA 62895 || |||| ||||| ||| || ||| | |||||| | || || | Sbjct 1115817 CATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTA 1115876 Query 62896 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 62955 | || || | |||||| || || ||||| | | | |||| | || ||| || Sbjct 1115877 CTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGC 1115936 Query 62956 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63015 | || ||||| | || ||||| || ||||| || || |||||||| |||||| || | Sbjct 1115937 AGAGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGT 1115996 Query 63016 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63075 |||| || | ||| | ||||| ||||| || || || || | | ||| || ||| | Sbjct 1115997 CCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACA 1116056 Query 63076 -CGACTCGAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGTGTATACA 63132 | || | || ||| | || || | || | || | | || | ||||||| Sbjct 1116057 ACTTCTGG-GCTGGGATTGTCT-TTCGTCCCAAGCCCTGCTGCT-CATACTGAGTATACA 1116113 Query 63133 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 63192 | ||||| ||||||||||||||||| | || || || ||| ||||| |||||||||| Sbjct 1116114 AACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCA 1116173 Query 63193 ACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63249 | ||| | || | || ||| ||||||||||| || || || || ||||| || | Sbjct 1116174 GTGTCCAAT-TC--TTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCG 1116230 Query 63250 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63309 | |||| ||| || | | || || || || || || | ||||| | | Sbjct 1116231 CGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACA 1116290 Query 63310 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63369 || | |||||| | |||||| || |||| ||||| || | || ||||| Sbjct 1116291 ACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTC 1116350 Query 63370 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63429 || || || || | ||| | || || ||| | | ||| ||| || | || | Sbjct 1116351 CACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCC 1116410 Query 63430 CGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 63489 |||| || || || ||||| || || || ||| ||||| | || || ||||| Sbjct 1116411 CGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTG 1116470 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 || || ||||| || || |||| || || ||||| | | || |||| | | | Sbjct 1116471 CAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAA 1116530 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | || | | | ||| || ||||| |||||| || || |||||||| | | | Sbjct 1116531 TCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCC 1116590 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 | |||||||| ||||| || || || | ||||| || || | || | | || | Sbjct 1116591 TGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGACTCATGAGGT 1116650 Query 63670 TGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 || |||| || | || | || | ||| | || || ||| | | || |||||| Sbjct 1116651 GATAGGTCTGGATCG-TGCGTTCCAAATCTCCGCAGTGGATGCCTGCAGAAACGCGCATT 1116709 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | ||||||||| || | ||||||||||| ||| | |||| ||| || || | ||| Sbjct 1116710 ATCATGTGCTGCGGACGCTCAACGATCTTCCCGTTCGTCTTCAGCAAATAAGACCTCTCC 1116769 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 | || ||||| ||||| || | || |||||| || Sbjct 1116770 AGGGTCTTAAAGCCAAAGTAATCATACTGAAAGTCGCG 1116807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947129918440