Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 seq1 131 1e-25 >seq4 Length=570487 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| ||||||||| || |||||||| Sbjct 309313 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGATAGATAGGGACAGTGGGAATCTCGT 309372 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 309373 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 309407 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 311326 CTCTTTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCACAC 311385 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||||||| Sbjct 311386 CCGTATTTAGCCTTAT 311401 >seq1 Length=2540030 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| ||||||||| || |||||||| Sbjct 919524 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGATAGATAGGGACAGTGGGAATCTCGT 919583 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 919584 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 919618 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 921537 CTCTTTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCACAC 921596 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||||||| Sbjct 921597 CCGTATTTAGCCTTAT 921612 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | | | ||| ||||| || ||||||||||| || |||||||| ||| Sbjct 1523562 TACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCAC 1523621 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || |||| || || || |||||||| | | ||||| || | | Sbjct 1523622 TGAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 1523681 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||| || ||| ||||||| | || || | | |||| Sbjct 1523682 GAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 1523741 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || |||||||| || || || ||||| |||||||||||||| || Sbjct 1523742 CCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947163260479