Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=2540030 Score = 107 bits (118), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 24981 TTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACA 25040 ||| ||| | | || | ||||| ||||| || || ||||| || || ||| | || || Sbjct 1523808 TTTCTACGATAAGGCAATATGCAGATATTCGTCAAAACTTTAACAGGAAAAACTATAACC 1523749 Query 25041 GTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGA 25099 |||| || ||| | ||||| || ||| | ||| | || | ||| || || || Sbjct 1523748 CTCGAGGTTGAGCCTAGCGACACGATAGAGAATGTTAAGGCTAAGATTCAG-GATAAGGA 1523690 Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || ||||||||| || | || ||||| || || || |||| |||| | | Sbjct 1523689 AGGAATTCCTCCAGACCAACAGAGGTTGATATTTGCTGGTAAGCAGCTAGAGGATGGTAG 1523630 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || | | || |||||||| || || || ||| |||||||||||||| || || || Sbjct 1523629 AACACTCAGTGACTACAATATCCAGAAGGAGAGCACCCTACATTTAGTGCTTAGACTCAG 1523570 Query 25220 AGGAGG 25225 |||||| Sbjct 1523569 AGGAGG 1523564 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || || ||||| || || ||| | || || |||| || ||| | Sbjct 2214455 ATGCAAATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 2214396 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || || || | ||| || || ||||| || || || ||||| Sbjct 2214395 GACACGATAGAGAATGTTAAGGCTAAGATTCA-AGATAAGGAAGGCATCCCTCCAGACCA 2214337 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| || || || ||||| |||| | | ||| || | || ||||| Sbjct 2214336 ACAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAA 2214277 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||| || || |||||||| || ||| | | || |||| Sbjct 2214276 CATCCAAAAGGAAAGTACCCTTCATTTAGTACTGAGGTTGCGTGGTGGAA 2214227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327952469335