Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 141 2e-28 >seq1 Length=2540030 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || || ||||| ||| ||| || ||||| || || || |||||| || ||||| ||| Sbjct 1523582 ACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTACCATCCTCT 1523641 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || ||||| | || |||||||| || ||||| |||||||| || ||| Sbjct 1523642 AGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGA 1523701 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || ||| || ||||| ||| | || || || | ||| || ||||| Sbjct 1523702 ATCTTAGCCTTAACATTCTCTATCGTGTC-GCTAGGCTCAACCTCGAGGGTTATAGTTTT 1523760 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | || ||||||||||||||||| Sbjct 1523761 TCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Score = 140 bits (154), Expect = 6e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||| || ||||| | || | ||| |||||||| |||||| || || |||||||| | Sbjct 1523328 TTTTATAACCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGT 1523387 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || | ||||| ||||| ||||||||||| || || ||||| | || ||||||| Sbjct 1523388 AGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGT 1523447 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT- 68405 | || ||||| |||||||| || |||||||| ||||| || ||| || ||||| ||| Sbjct 1523448 CTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTC-GCTA 1523506 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | ||| || || || || |||||||| || || || || ||||| Sbjct 1523507 GGCTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || | | || ||| || || || || || ||||||||||| || || Sbjct 2214227 TTCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCAC 2214286 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||||| ||||| ||||||||||| || || ||||| | || |||||||| || | Sbjct 2214287 TCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 2214346 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | ||||||||||| ||||||||||| ||||| || ||| || ||||| ||| | || Sbjct 2214347 GGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTC-GCTAGGCTCA 2214405 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | ||| || |||||||| || | || ||||||||||| ||||| Sbjct 2214406 ACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCAT 2214455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622296317480