Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 >seq1 Length=2540030 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||||||||| || | ||| | ||||| || || |||||||| ||||| | Sbjct 1523564 CCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTG 1523623 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || |||| || || || || || |||| | |||||| ||||| Sbjct 1523624 AGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGG---TCTGGA 1523680 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| |||||||| || || || || || || ||||| | ||||| | || Sbjct 1523681 GGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCA 1523740 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || || | ||| ||||||||||||||||| Sbjct 1523741 ACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | || ||||| | ||||| || ||||| |||||||| || ||||| Sbjct 2214228 TCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACT 2214287 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | || || ||||| || || || || || |||| | |||||| ||||| Sbjct 2214288 CAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGG---TCTGG 2214344 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| ||||| || || || || || || || ||||| | ||||| | || Sbjct 2214345 AGGGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTC 2214404 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || || | ||| ||||||||||| ||||| Sbjct 2214405 AACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCAT 2214455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654263971102