Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 152 6e-32 >seq3 Length=1317241 Score = 152 bits (168), Expect = 6e-32 Identities = 541/835 (65%), Gaps = 19/835 (2%) Strand=Plus/Plus Query 114209 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT 114268 |||||||| ||||||||||| ||| | | | |||||||| || || |||| | Sbjct 1115612 TACATTGTTTCAAAAATGCGTTTATTAAGTTCTCGAGCCTCGTCTGACTCGAACGGGTAC 1115671 Query 114269 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 114328 || | || || ||| || || ||||| || || | || || || | |||||| Sbjct 1115672 CGCATTAGCATGAAGGTATCTGCTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCTG 1115731 Query 114329 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 114388 | |||||| | || | ||| || || ||||||| || || || |||| || Sbjct 1115732 AAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTAATTCCTGTCAATTACTTTATTAAGG 1115791 Query 114389 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 114448 || | |||| || |||||||| || |||| | |||| || | || |||| Sbjct 1115792 TTATAAGTGATTACACGGCAGATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGC 1115851 Query 114449 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 || ||| |||| || || || | ||| || | ||||||||| | ||| ||||| Sbjct 1115852 GTGTTAACAAACTTTGGCAGCGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTG 1115911 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCT 114566 | ||| | | | ||||| || | || || | ||||| |||||||| |||| Sbjct 1115912 TTTGTGAATTGGACGATTTCACAGCAGAGGTTACTGGA--TTTAATAGTGCCCAAATTCT 1115969 Query 114567 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 114626 || || ||| | |||||| || |||||||| | |||||| || || || ||||| Sbjct 1115970 GCTGGTTACTCTTAGCGTTACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGA 1116029 Query 114627 TTTGGGACTTGAGAATAGCCTTCCA-GACATCGGCGGCTGGCACAGTGGCGTTGGCTCGC 114685 ||||||||| |||||| || ||| || || | |||||| | || | || | || | Sbjct 1116030 TTTGGGACTGGAGAATTGCAAACCACAACTTCTG-GGCTGG--GATTGTCTTTCG-TCCC 1116085 Query 114686 ---CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 114742 |||| || ||| |||| || || | ||||||||| || ||| |||| Sbjct 1116086 AAGCCCTGCTGCTCATACTGAGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGC 1116145 Query 114743 AGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTC 114802 || ||| || |||||| || | || | ||| | | ||||||| || ||| Sbjct 1116146 AGACCTCTACACTCATCTGGACACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTC 1116205 Query 114803 ATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCAT 114860 ||||| |||||||||||||| || || |||| | ||||| || ||| ||||| Sbjct 1116206 ATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATCCC--TTGCACGCTGGTCTTCTG 1116263 Query 114861 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 114920 | || || || | | || || || | | |||||||| ||||| || ||||| | Sbjct 1116264 CGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGAT 1116323 Query 114921 ACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCAT 114977 | | ||| | ||| || ||||| | |||| | |||| || ||| | || || || | Sbjct 1116324 ATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTCCACGTACTTGGCCGTCGCGT 1116383 Query 114978 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT 115032 |||||| ||||| || | ||| || | || ||| || || |||| ||| Sbjct 1116384 TAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCCGTTGGTGCCCCTAAT 1116438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353532797720